Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0878 ATGGGAAAGGAAGGACCTTGTTATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGGCCACCAGAGAAGCCAGTACTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTACATGCTCGGGCAGAAACTGTTAATGACGATCAAAGGGTTTCCAGGGTAATGCGCTTACCATTAAGTAAGAACAAAGAAATGAAATTGCTCAAGAGAAAGGCGGGACAAACTGATTATATTGTTTCTGGAGGGTTTCCCCCCACTTACATTGAAGAATTTGGAAAGGTTGCAGATGAAGATACATGTAATAGATCAAGTTCAGGGTCAGCCATCTCTAACTCAGAGAGCTGTGCTCAATTTGGTGGCACAGATGCTAGTGATTTGACAGGTCCAGCTCAGTCAGTGGTCTGGGAATCTACGGTGCCTGCGAAGAAGAGGGCATGTGGTGGTCGTCCAAAGCCTTATTCTGTCGAAAAGCTCACCAAAGATTTATGTACTATCCTTCATGAACAACAGTCTTATTTTTCTGCATCTTCTGAAGAGGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATTAGGCATCCTAGCACTGTTGCTCGTGAAGAAGAGTCTGAGGCTAGCTCTCATTCGGTTGATAATAAACAATGCCTAATGAGCGAGGCATATTCATGTTCTGATGGTATTCCCGTGTGCAGTGATTACAATGGCATAAACTTCTCGTCTCAGGGAGTTGGCAAAGTTGTGCAACATGAGGAACTTAAAAGGCATGTTATTTTATATAAAGACAAGTCTCAGCTTGAAAGACTACAAGTCCTTGGAAATCATGATTCACCACTGTGCTTAATAGATTTAAATTACATAGTGAACTATGAGGAATTTACAAAAAACTTGACAAATGAAGAACAGCAGCAATTGCTGAAGTATCTTCCGGTGGCTGATACTGGTGAAGCTCCCCATAGCCTTACAATTATGTTTAATAGCTCTAAATTCAAGGAGAACTTAACTTATTTCCAGCAACTTCTTGGGGAAGGTGTCTTTGATATCTCTTTGTTGGGGGCAAAACCTGAAGACTGCAAGACCTTGAAAAGGCTTGCATTATCTAATCTTTCAAAGTCAAAATGGGTAGAACAGTATATTTTTCTCAAGAATTGTAAAGATAGAACTGGACTATCTATTGCTATGGGCTCTCCTGGAATAGCACACAGTAATGTGGCACATGTCAACAGATTGCACCACAGCCAAAATCGCAATTTTCCAGAATTGAAGAAAACAATGAGGAGTCCGAAAAGTGTGATCGTAAAGGCTGGATGTGAGGGCAAAGAAGTTGCAGAATATGGTTCTAGCTTCAGTGAAAAAAGCTTGTTTGCTTTGCCTTGTAATCGTAGTTCGTACATGATGGATTCTTTAAACTTTGATCATGAGAGTTCTGATCAGGATCTGCTACTGGATGTGCCATCTAACAGCTCTTTTCCACTAGCAGAGCTCCTGCATCCTACTACAAGCTTTGGTGGTCAAGCCAGCGCCGGTCGTAGCTCAATATTCTCACATGTTGTCCATCATTATAGCTAA 1626 0.4164 MGKEGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETVNDDQRVSRVMRLPLSKNKEMKLLKRKAGQTDYIVSGGFPPTYIEEFGKVADEDTCNRSSSGSAISNSESCAQFGGTDASDLTGPAQSVVWESTVPAKKRACGGRPKPYSVEKLTKDLCTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSILIRHPSTVAREEESEASSHSVDNKQCLMSEAYSCSDGIPVCSDYNGINFSSQGVGKVVQHEELKRHVILYKDKSQLERLQVLGNHDSPLCLIDLNYIVNYEEFTKNLTNEEQQQLLKYLPVADTGEAPHSLTIMFNSSKFKENLTYFQQLLGEGVFDISLLGAKPEDCKTLKRLALSNLSKSKWVEQYIFLKNCKDRTGLSIAMGSPGIAHSNVAHVNRLHHSQNRNFPELKKTMRSPKSVIVKAGCEGKEVAEYGSSFSEKSLFALPCNRSSYMMDSLNFDHESSDQDLLLDVPSNSSFPLAELLHPTTSFGGQASAGRSSIFSHVVHHYS 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0878 541 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Lal16g0878 541 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 294 405 IPR044867 -
Lal16g0878 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 46 - -
Lal16g0878 541 SMART GATA_3 1 60 IPR000679 GO:0006355|GO:0043565
Lal16g0878 541 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Lal16g0878 541 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Lal16g0878 541 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Lal16g0878 541 Gene3D - 4 85 IPR013088 GO:0006355|GO:0008270
Lal16g0878 541 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 538 - -
Lal16g0878 541 PANTHER OSJNBB0038F03.10 PROTEIN 1 538 IPR044589 -
Lal16g0878 541 Pfam Asx homology domain 286 366 IPR028020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0878 Lal-Chr16 5759532 5765333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0878 1 516 C2C2-Gata Transcription Factor Family AT4G17570 50.662 8.40e-145 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal16g0878 ASXH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0878 - - gmx:100799745 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0878 16 5759532 5765333 Lal15g0863 15 6468521 6473876 LSH
Lal16g0878 16 5759532 5765333 Lal23g1241 23 13587183 13597508 LSH
Lal16g0878 16 5759532 5765333 Lal15g0863 15 6468521 6473876 PCT
Lal16g0878 16 5759532 5765333 Lal23g0746 23 10056525 10061681 PCT
Lal15g0863 15 6468521 6473876 Lal16g0878 16 5759532 5765333 PCT
Lal23g0746 23 10056525 10061681 Lal16g0878 16 5759532 5765333 PCT