Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0876 ATGGCTGTGCCCATTCAGATTGAACTAAATGTATGGATATTTGTTGGTTTTGTTTCATCAATTGTTGGATTGCTTTGTTATGCTTTCAGCTCCTCCTTCAACCATTTATTTGGAGAGTGGAACCTCTTCAAAATCTTTCTCTATGTTATATTCAGTTTCATTGTTTTCTTCATGACTTTGGTTACAAAGGTATGGCAACGCTCAAATAGTATCTTGTTCAAAACTCATATGGCAATTTTACTCTTGTTAGCTACTTCTGTGTACTCAGTTTTCTATGATAAAGCTGTGAACCAAAAACCAGATGCATATATTTTGATCTCTTGTGCTGCTTTTGCTGTTATGTCTTTATGTTTGTCAAAGCAAACTCAATTTGGATGTTTTAGTTATTCCCTTATCATTATTAGTTCCTGGACAGATATCACACCACAAAGTGAGAATTTTGAACTCCAAGATCACTTGGTCATTGAAATGGATTCACTTAGACATCGGGTACCAGAGATGCATGGATCGTTGGATAAAAACTGCGAAGAAATTAAATCTTTGTTAAGAATGGAGTCAAAAGAAGTTCAAAAGCTTGGCATTTGGGGCATGGGTGGCATAGGTAAGACAACCATTGCCAATGCTGTTTTTGATGAACTGCTTTCCCAATTTGATCGTATTTGCTTTCTGGAAAATGTACATGATGATTTAGATAGGCATGGGCTTAACTATGTTTGCAGTAGACTTTTTTCCGAGCTACTAGGGAGAGATGTTGATATTGATATTGACGCTTCCGAATTAGTACCCTCTAATGTTATGAGTATACTTGGGAATACGAAAATTCTAATCGTATTAGATGATGTGTATTCATCAGAACTTGTAGAAAAATTGATTGGAGGAAGGCATGATTGGCTAGGTGCTGGAAGCATAGTCATTTTGACAAGCAGAGATCGGTATGTGCTTACGAGAGCAAGAGTTGATGTGATTTATGAAGTCAAACCTATGAGCTTTGAAGACTCCCTTGAACTATTCAGCTTATATGCCTTTAACCAAACCCATCCTGAAACAGAATATGAGGAGCTATCAAAGACCGCAGTTGGTTATGCCAAAGGCATCCCCTTAGTTTTGAAAGTTTTGGGATCATCTCTTCACTTCAAAACTAAAAGCGGATGGGAAAGTAGACTAAGGATGATTACCAATGCAGAAATTCAGAATGTTTTCAAATTGATTTTCAATCAATTAGCAGATGCAGAAAGAGAAATATTTCTGGACATCGCGTGCTTTTTTGAAGGGTGTGATAGAGACCAAGTATCAAGAGTATTAGACGCCTGTGGTTTCTTTGCAGATATTGGGATTAAAATCCTTTTAGACAAGGCTCTTATAACTATTGATTCACACAATTGTATAAAAATGCATGACTTCTTACAGGAAATGGGTCGTGATATTGTTTATCGCGAATCTATGGACAACCCTGGAAGACGGAGCAGACTGTGGAACTCTCAGGACGTCATGGATGTGCTGACAAGTAATAAAGGAACAGATGCTGTTGAAAGCATGTTCTTGGATATGACTCAAATTCCTAATCTACACTTAAGCTCATATGCCTTCAAAAAGATGTCAAGACTAAGATTACTTGCTTTTGATAGCATCAACAATTTGATGATTAAGAATCCTGTGAGCATTCCAGACGGTCTTGAATTGCCTCATAACTTACGATATCTGCATTGGGATGAGTATCCATTGAACTCTTTGCCATCAATTCGGTGGGAAAATCTTGTTGATCTATCCATGCCACACAGCAATCTTAAAAAACTTTGGGATGGAGCACAGAATATGCCGATGCTAAAGAAAATTTATCTTCCTTTCTCAAAGCTTCTGATAGAGTGTCCAGATTTGTCTGGTTCGCCAAATCTTGAATCTATCTCATTACTTGGTTGTGAAAGTTTGGGTCAGCTTCATCCATCTATTTTCACTCTCCAAAAGCTTGAAGAATTAATTGTGAGTGGATGCACATCGCTTAGCAGCATTTGCAGCAAAACTTGTTCACCATCTCTCCAAAGATTGCATGCTGTGGGATGCACCAATCTCCTAGAGTGCTCAATCACAACGCTGGGTGATCAATGCAAACCGCATTTGTATATGTAA 2124 0.3785 MAVPIQIELNVWIFVGFVSSIVGLLCYAFSSSFNHLFGEWNLFKIFLYVIFSFIVFFMTLVTKVWQRSNSILFKTHMAILLLLATSVYSVFYDKAVNQKPDAYILISCAAFAVMSLCLSKQTQFGCFSYSLIIISSWTDITPQSENFELQDHLVIEMDSLRHRVPEMHGSLDKNCEEIKSLLRMESKEVQKLGIWGMGGIGKTTIANAVFDELLSQFDRICFLENVHDDLDRHGLNYVCSRLFSELLGRDVDIDIDASELVPSNVMSILGNTKILIVLDDVYSSELVEKLIGGRHDWLGAGSIVILTSRDRYVLTRARVDVIYEVKPMSFEDSLELFSLYAFNQTHPETEYEELSKTAVGYAKGIPLVLKVLGSSLHFKTKSGWESRLRMITNAEIQNVFKLIFNQLADAEREIFLDIACFFEGCDRDQVSRVLDACGFFADIGIKILLDKALITIDSHNCIKMHDFLQEMGRDIVYRESMDNPGRRSRLWNSQDVMDVLTSNKGTDAVESMFLDMTQIPNLHLSSYAFKKMSRLRLLAFDSINNLMIKNPVSIPDGLELPHNLRYLHWDEYPLNSLPSIRWENLVDLSMPHSNLKKLWDGAQNMPMLKKIYLPFSKLLIECPDLSGSPNLESISLLGCESLGQLHPSIFTLQKLEELIVSGCTSLSSICSKTCSPSLQRLHAVGCTNLLECSITTLGDQCKPHLYM 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0876 707 Pfam Leucine Rich Repeat 584 603 IPR011713 -
Lal16g0876 707 PRINTS Disease resistance protein signature 191 206 - -
Lal16g0876 707 PRINTS Disease resistance protein signature 268 282 - -
Lal16g0876 707 PRINTS Disease resistance protein signature 362 376 - -
Lal16g0876 707 PRINTS Disease resistance protein signature 650 666 - -
Lal16g0876 707 SUPERFAMILY L domain-like 513 690 - -
Lal16g0876 707 Gene3D Ribonuclease Inhibitor 478 702 IPR032675 -
Lal16g0876 707 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 171 695 IPR044974 GO:0006952
Lal16g0876 707 Pfam NB-ARC domain 175 397 IPR002182 GO:0043531
Lal16g0876 707 SUPERFAMILY "Winged helix" DNA-binding domain 395 500 IPR036390 -
Lal16g0876 707 Gene3D - 154 322 IPR027417 -
Lal16g0876 707 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 171 695 - -
Lal16g0876 707 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 418 IPR027417 -
Lal16g0876 707 Gene3D - 328 408 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0876 Lal-Chr16 5749230 5752306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0876 170 689 WRKY Transcription Factor Family AT4G12020 39.623 1.33e-91 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0876 - - lang:109349618 1184.47