Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0874 ATGGATGAGAGGTATGAGCCATTGAAGGACCTTGGTTTTGGCAATTTTGGAGTTGCAAAGTTGGCCAAAGATAAGAAAACTGGAGACCATGTTGCAATCAAATACATAGAAAGAGGCAAAAAGATTGATGAGAATGTTCAGAGGGAGATAATTAACCACCGATCTTTAAGGCATCCAAATATTATCAGGTTCAAAGAGGTGTTCCTGACCCCTTCTCATTTAGCTATTGTCTTGGAGTATGCTTCAGGTGGTGAACTCTTTGAGAGGATTTGCACCGCGGGTCGATTTAGTGAAGAAGAGGCAAGATATTTCTTCCAGCAGCTAATATCTGGGGTTAGCTACTGTCATACAATGGAAATTTGTCATAGAGATCTGAAATTAGAAAACACTCTCTTGGACGGAAATCCATCTCCTCGGCTTAAAATTTGTGACTTCGGTTACTCCAAGTCTGCTATACTGCACTCTCAACCGAAATCAACAGTTGGAACTCCTGCATATATTGCTCCAGAAGTTCTGTCACGAAAGGAGTATGATGGAAAGATTGCAGATGTTTGGTCATGTGGTGTGACTCTATATGTGATGTTAGTTGGTGCATACCCTTTTGAGGATCCTGAAGATCCTAGAAATTTCAGAAAGACTATTGGAAAAATAATAGGTGCTCAGTATTCCATACCAGACTATGTACGTGTATCTGCAGTGTGTAGGAATCTTCTCTCTCGTATCTTTGTTGCTGATCCTACAAAGAGGGTTAGTATCCCAGAGATAAAGCAGAACCCATGGTTTTTGAAGAATTTGCCTAAAGAGATCATTGAAGCTGAAAAAGAAGGTTATGAAGGAATACAGAAAGACCAACCAAGCCAAAGTGTGGAAGAAATCATGAGGATCATACAAGAGGGAAGTACACCAGGGTCAGGATCCAAAGCTGGTGAGGGTGGTCAAGCTCTCACCGGGTCAATGGATGTTGAGGACGATGACGATGATGATGAGGAAGTCGATGTTAGTGGTGACTATGAAAATGTGTGA 1023 0.4145 MDERYEPLKDLGFGNFGVAKLAKDKKTGDHVAIKYIERGKKIDENVQREIINHRSLRHPNIIRFKEVFLTPSHLAIVLEYASGGELFERICTAGRFSEEEARYFFQQLISGVSYCHTMEICHRDLKLENTLLDGNPSPRLKICDFGYSKSAILHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTIGKIIGAQYSIPDYVRVSAVCRNLLSRIFVADPTKRVSIPEIKQNPWFLKNLPKEIIEAEKEGYEGIQKDQPSQSVEEIMRIIQEGSTPGSGSKAGEGGQALTGSMDVEDDDDDDEEVDVSGDYENV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0874 340 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0874 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Lal16g0874 340 CDD STKc_SnRK2 4 260 - -
Lal16g0874 340 MobiDBLite consensus disorder prediction 296 340 - -
Lal16g0874 340 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Lal16g0874 340 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 3 336 - -
Lal16g0874 340 SUPERFAMILY Protein kinase-like (PK-like) 3 268 IPR011009 -
Lal16g0874 340 PANTHER SERINE/THREONINE KINASE 3 336 - -
Lal16g0874 340 MobiDBLite consensus disorder prediction 319 340 - -
Lal16g0874 340 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
Lal16g0874 340 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0874 340 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0874 340 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0874 Lal-Chr16 5739429 5743519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0874 4 273 CBL-interacting serine-threonine protein kinases AT4G24400 42.500 1.43e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Lal16g0874 Pkinase 2.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0874 K14498 - gmx:100782714 605.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0874 16 5739429 5743519 Lal16g0874 16 5739429 5743519 ECH
Lal16g0874 16 5739429 5743519 Lal15g0859 15 6443927 6449138 LSH
Lal16g0874 16 5739429 5743519 Lal15g0859 15 6443927 6449138 PCT
Lal15g0859 15 6443927 6449138 Lal16g0874 16 5739429 5743519 PCT