Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0867 ATGAAGTGTTTCTTCTTCAAAGATAAATCCAAATCAGCCCCTGAGTTGCAAAACCAAGGGAACAAGAAGAAAAACCCAGGTTTGAACCGTGCTACAAACTCAACTGGTTCAATATCTTCATCACCAAAGAGTGTGAATGATTTGTATAAAGAGAAAGAGCATAACTTTAGAATTTTTACTTTGCAAGAGCTAAGAGATGCTACAAATGGGTTCAATAGGATGCTGAAGATTGGAGAAGGGGGTTTTGGGAGTGTATATAAAGGATCCATTAGGCCTCTTCATGGACAAGGTGATCCAATTGTAGTTGCTATCAAAAGGCTTAATACCCGTGGCTTTCAGGGTCATAAAGAGTGGCTTGCAGAAGTGAAATTTCTAAGCATTGTTGATCACCCAAATTTGGTTAAGCTTTTGGGATACTGCTCCGTTGATGGGGAAAGAGGAATCCAACGGTTGTTGGTGTATGAGTTCATACCCAACAGGAGCTTGGAAGATCACCTTTTCAATAAAGGTTTTCTCCCACTAGCTTGGAAAACAAGATTGGAGATCATGCTTGGTGCTGCTCAAGGGTTAGCTTATCTACACGAGGGCCTGGAGATTCAGGTGATCTACCGCGATTTTAAATCATCAAATGTTCTATTGGACACGGATTTCCGCCCAAAGCTCTCAGATTTTGGTCTTGCCAGGGAAGGTCCACAAGGCGATCAGACTCATGTATCTACTGCCGTAGTTGGAACACAAGGATATGCTGCACCAGAGTATATTGAAACAGGTCATCTCAAAGTTCAGAGTGACATGTATAGTTTTGGTGTTGTACTCTATGAGATCCTCACAGGAAGACGGTCATTGGAAAGAAACCGTCCAACAGCCGAACAAAAGCTACTAGATTGGGTTAAACAGTATCCTGCTGACACTAGCAGATTCAGCATGATAATGGACCCACGCCTCAGGAACCAATATTCTCATGGCGCAGCTCGCAAAATAGCGAAGTTAGCTGATAGCTGCTTAAAGAAGATTCCTGAAGATAGACCATCCATGAGTCAGATAGTTGAAACTTTGAAGCAAGCATTGCAACATTCAGACACATCAAGCAATTCTCAGAATCCTGCTGAATCATCTCGGTCTAAAGTGGTTCGACAAGGTAAATAG 1146 0.4223 MKCFFFKDKSKSAPELQNQGNKKKNPGLNRATNSTGSISSSPKSVNDLYKEKEHNFRIFTLQELRDATNGFNRMLKIGEGGFGSVYKGSIRPLHGQGDPIVVAIKRLNTRGFQGHKEWLAEVKFLSIVDHPNLVKLLGYCSVDGERGIQRLLVYEFIPNRSLEDHLFNKGFLPLAWKTRLEIMLGAAQGLAYLHEGLEIQVIYRDFKSSNVLLDTDFRPKLSDFGLAREGPQGDQTHVSTAVVGTQGYAAPEYIETGHLKVQSDMYSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADTSRFSMIMDPRLRNQYSHGAARKIAKLADSCLKKIPEDRPSMSQIVETLKQALQHSDTSSNSQNPAESSRSKVVRQGK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0867 381 ProSitePatterns Protein kinases ATP-binding region signature. 77 105 IPR017441 GO:0005524
Lal16g0867 381 PANTHER OS01G0588500 PROTEIN-RELATED 15 377 - -
Lal16g0867 381 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL20-RELATED 15 377 - -
Lal16g0867 381 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0867 381 MobiDBLite consensus disorder prediction 7 44 - -
Lal16g0867 381 CDD STKc_IRAK 77 354 - -
Lal16g0867 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Lal16g0867 381 Gene3D Transferase(Phosphotransferase) domain 1 157 379 - -
Lal16g0867 381 SUPERFAMILY Protein kinase-like (PK-like) 53 352 IPR011009 -
Lal16g0867 381 Pfam Protein tyrosine and serine/threonine kinase 76 352 IPR001245 GO:0004672|GO:0006468
Lal16g0867 381 MobiDBLite consensus disorder prediction 12 44 - -
Lal16g0867 381 MobiDBLite consensus disorder prediction 354 381 - -
Lal16g0867 381 Gene3D Phosphorylase Kinase; domain 1 51 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0867 Lal-Chr16 5689566 5692854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0867 3 352 Glycoside Hydrolase AT3G07070 43.056 9.80e-93 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal16g0867 PK_Tyr_Ser-Thr 6.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0867 - K00924 gmx:100305403 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0867 16 5689566 5692854 Lal16g0867 16 5689566 5692854 ECH
Lal16g0867 16 5689566 5692854 Lal15g0852 15 6391174 6405850 LSH
Lal16g0867 16 5689566 5692854 Lal23g1255 23 13663528 13672330 LSH
Lal16g0867 16 5689566 5692854 Lal15g0852 15 6391174 6405850 PCT
Lal16g0867 16 5689566 5692854 Lal23g0757 23 10158103 10161298 PCT
Lal15g0852 15 6391174 6405850 Lal16g0867 16 5689566 5692854 PCT
Lal23g0757 23 10158103 10161298 Lal16g0867 16 5689566 5692854 PCT