Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0863 ATGGCTGTTCAAGCTCAATATCCTCCCAATATTCTTCTCCTAAACAGAAATGGTCAAGAAGGAAATGATTACTCATTACCACAACCACAATCAAAAGTTGAACTCCTTGATCAATCCCAAACTCTATACAACAATGAAAATGGTAATTCTCGCAAAAGAGGAAGAGAAACTGTTGTAGCCAACACATCTAATAATATTATAAACCAATCCTTTTCTATGCAACCACATCCTCCAAAGTTCATTGAGCTTTCTCAACTCCATAATCAACACCAAAATGTGGTTTCTACAGGCTTAGGGTTATGTTTTGGTGACCAACAAAAGCAAAGATTACAACTTCATCAACAACATCATCGGTGTCACTCATCTTCTTCCTTGTCTTTGTTGTCCCAAGGATTTTCTTCACAGATGAAACAAAGAACAGATGAATTCGACATTTTCCTTCATGCCCAGGGAGATGAATTAGTGCGTACATTGGCTGAGAAGATGCAAAGGCATTACCAAGAGCTGCTGCGCAAGGCGGAGGAGGCGGTGGCGCGTCGACTGAGAGAAAAGGAAGCAGAAGCGGATAAGGCCATGCGCCGGAACGCGGAGCTAGAGGCACGCGCCGCCCAGCTGAGCGCGGAGGCCCAGGTGTGGCAGGCCAAGGCGATGACACAGGAGGCGGCGGCGGCATCGTTACAAGCCCAACTGCAGCAGGCAATGACGGCCGCCGGGTGCCGCGGTGGAGACGACGGCGGCGCAGGGTTGTCATTCGCCATGGATGGGGGCCAGGCGGAGGATGCTGAGTCGGGTTATATTGATCCGGACAGGGTGGAAGTTGTGGCGTCAGTGGTGGCGCGTGCAAAATGTAAGGGGTGTGGGAAGCGCGTGGTATCAGTTGTGGTATTGCCTTGTCGACACTTGTGCATTTGTGCAGAATGTGATTCACTTCTTAGAGCATGCCCAGTTTGCCTTACTCTAAAGAATTCAACCGTTGAAGTATATCTCTCTTAA 993 0.4854 MAVQAQYPPNILLLNRNGQEGNDYSLPQPQSKVELLDQSQTLYNNENGNSRKRGRETVVANTSNNIINQSFSMQPHPPKFIELSQLHNQHQNVVSTGLGLCFGDQQKQRLQLHQQHHRCHSSSSLSLLSQGFSSQMKQRTDEFDIFLHAQGDELVRTLAEKMQRHYQELLRKAEEAVARRLREKEAEADKAMRRNAELEARAAQLSAEAQVWQAKAMTQEAAAASLQAQLQQAMTAAGCRGGDDGGAGLSFAMDGGQAEDAESGYIDPDRVEVVASVVARAKCKGCGKRVVSVVVLPCRHLCICAECDSLLRACPVCLTLKNSTVEVYLS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0863 330 PIRSF SBP1_RNase_bind 1 330 IPR017066 -
Lal16g0863 330 Pfam Zinc finger, C3HC4 type (RING finger) 281 318 - -
Lal16g0863 330 ProSiteProfiles Zinc finger RING-type profile. 283 317 IPR001841 -
Lal16g0863 330 Coils Coil 159 215 - -
Lal16g0863 330 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 329 IPR017066 -
Lal16g0863 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 330 IPR013083 -
Lal16g0863 330 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0863 Lal-Chr16 5661378 5663826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0863 283 319 Miscellaneous Gene Families AT2G21380 40.541 4.36e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0863 K19042 - gmx:100779548 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0863 16 5661378 5663826 Lal16g0863 16 5661378 5663826 ECH
Lal16g0863 16 5661378 5663826 Lal15g0840 15 6285952 6288421 LSH
Lal16g0863 16 5661378 5663826 Lal23g1257 23 13690901 13692975 LSH
Lal16g0863 16 5661378 5663826 Lal15g0840 15 6285952 6288421 PCT
Lal16g0863 16 5661378 5663826 Lal23g0763 23 10196134 10198465 PCT
Lal15g0840 15 6285952 6288421 Lal16g0863 16 5661378 5663826 PCT
Lal23g0763 23 10196134 10198465 Lal16g0863 16 5661378 5663826 PCT