Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0857 ATGGTTTGCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCTAAGGGACTCAAGGTTCTTCTCCTTGATGGAGACATCAATTCTGCTTCTGAGATAAGAGCAAAACTTGAGGCCATGGACTATAATGTATCTACATTCTACGATGAAAAAGAAGCCTTGTCAGCAATCTCAAGTAGACCTGAAGACTTCCACATTGCCATAGTGGAGGTGAGTACAAGCAGAATCTTGGGAGGTTTCAAATTTCTTGAGAATGCTAAGGACTTACCAATCATTATGACTTCAAACAACCATTGCCTGAACACCACGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTTAGCAAACCTCTCTGTGAGGACAAGATCAAAAATATCTGGCAGCATGTAGTTCACAAGGCATTCAATGCTGGAGCAAGTGTTAAATCTGAACCTCTAAAACCTATCAAAGAATCAGTAGTGTCCATGTTGGACTTAGAAAAGGACAACAGACAACGTGAAACTATAATGTCAATTGATTTGGAGAAAGTATCCAGATTAACTGATAATGATCCTGAGAAGTCACCTGGAAGTGATAAGTATCCGGCTCCTTCAACGCCGCTATTGAAACAAGGAGCAAGCTTACCGGATGACGGTGATTGCCAAGAGCAGACTAATTACTCAACTGAGAAAGAAAGCGGCGAGCATGATGGACAACCTAAATCTGTCGAAACTACTTGTGGAAATTTGAGTTCTGAAAGTACCTCATTACAAAGGGAACCCGATAAGACTCTGGTTACGGAGGAAGAGGACTTTGCCAACCGTTCTAAAGGTGAGAATGAGAATGAAAATGCAGTCTCTTCACATCCACAGAATATAAAGATTCAAAGCAAGATTGATGGCAGTAGAAAATCTCTCAAGAAAGTTGGCGCTCTCAGTAATTCATGTGAGACTAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACACCAGAGCTGCACAAAAAATTTGTGAAGGCATTGGAACAACTTGGCATTGATCAAGCTATTCCTTCTAGAATATTGGAACTAATGAAAGTAGAAGGCTTGACAAGGCATAATGTAGCAAGCCACCTTCAGAAATATAGAATGCATAAGAGACACATCTTGCCTAAGGAAGAAGATAGGAAATGGTTAAATCAAAGGGATCCAATGCAAAGGAGCTACTGTCGTCAAAGACCAATAATGTCCTTACCTCCATATCATTCTAATCACACCCTTGCTCAAGCTCCTGTATATTCTATGTGGGGACAACCTCGCTGTCAAATGCACGGTATGCAGATTTGGAGTCCTCCTGACTATCCCTTGTGGCAGCCTACAGAAAGTTTGCACTGGAAGCCATTTCCAGGGATGCATGCAGATGCATGGGGTTGCCCAGTCTTACCACCTCCACAAACTCCTTTCTTTTCCCACCCTCAACCTCAAAATATGCCTGCATTGGACTACAAGTTTCACTTGCCACAAAGATCCTTTGAACATTATCCGGCAGAGGATATCATTGACAAGGTTGTGAAAGAGGCATTAACCAACCCATGGCTACCCTTGCCTTTAGGCCTAAAACCTCCTTCCACAGATAGTGTGGTAACTGAGCTTACCATGCAAGGCATTTCCAGCATTCCTCCTTGCACCAAGGGTTCTAACCCCAGTAGACATGGCCACTAA 1683 0.4254 MVCTANDLQEWKDFPKGLKVLLLDGDINSASEIRAKLEAMDYNVSTFYDEKEALSAISSRPEDFHIAIVEVSTSRILGGFKFLENAKDLPIIMTSNNHCLNTTMKCIALGAVEFLSKPLCEDKIKNIWQHVVHKAFNAGASVKSEPLKPIKESVVSMLDLEKDNRQRETIMSIDLEKVSRLTDNDPEKSPGSDKYPAPSTPLLKQGASLPDDGDCQEQTNYSTEKESGEHDGQPKSVETTCGNLSSESTSLQREPDKTLVTEEEDFANRSKGENENENAVSSHPQNIKIQSKIDGSRKSLKKVGALSNSCETKANRKKMKVDWTPELHKKFVKALEQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRHILPKEEDRKWLNQRDPMQRSYCRQRPIMSLPPYHSNHTLAQAPVYSMWGQPRCQMHGMQIWSPPDYPLWQPTESLHWKPFPGMHADAWGCPVLPPPQTPFFSHPQPQNMPALDYKFHLPQRSFEHYPAEDIIDKVVKEALTNPWLPLPLGLKPPSTDSVVTELTMQGISSIPPCTKGSNPSRHGH 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0857 560 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 554 - -
Lal16g0857 560 SUPERFAMILY CheY-like 16 134 IPR011006 -
Lal16g0857 560 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 554 IPR044825 GO:0003700|GO:0045893
Lal16g0857 560 MobiDBLite consensus disorder prediction 234 255 - -
Lal16g0857 560 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Lal16g0857 560 Gene3D - 18 143 - -
Lal16g0857 560 MobiDBLite consensus disorder prediction 171 190 - -
Lal16g0857 560 MobiDBLite consensus disorder prediction 171 286 - -
Lal16g0857 560 Gene3D - 314 376 - -
Lal16g0857 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 315 374 IPR017930 -
Lal16g0857 560 SMART REC_2 18 128 IPR001789 GO:0000160
Lal16g0857 560 MobiDBLite consensus disorder prediction 256 272 - -
Lal16g0857 560 Pfam Myb-like DNA-binding domain 321 370 IPR001005 -
Lal16g0857 560 SUPERFAMILY Homeodomain-like 317 375 IPR009057 -
Lal16g0857 560 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Lal16g0857 560 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 318 373 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0857 Lal-Chr16 5591895 5599185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0857 1 547 Response Regulator Gene Family AT4G18020 48.276 1.16e-142 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lal16g0857 Response_reg 2.5e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0857 - - gmx:100784905 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0857 16 5591895 5599185 Lal15g0833 15 6183378 6191047 LSH
Lal16g0857 16 5591895 5599185 Lal23g1264 23 13730884 13737234 LSH
Lal16g0857 16 5591895 5599185 Lal15g0833 15 6183378 6191047 PCT
Lal15g0833 15 6183378 6191047 Lal16g0857 16 5591895 5599185 PCT