Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0849 ATGCCTGTCCCACTTGCTCCTTATCCAACACCACCAGCTCCACCAGAAAATGGTGCACAGAGTCAACTTGTTTGCTCTGGTTGTAGAAACCTTCTACTCTATCCTGTTGGAGCCACCTCAGTGTACTGTGCTGTTTGCAATGCAGTCACACCAGTGCCACCTCCTGGTAATGATTATTACTTTGTAGGCACAGAAATGGCTCAGTTAGTGTGTGGAGGCTGCCATACTCTACTGATGTACATCCGCGGAGCAACCAGTGTGCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAATTGTGGGAACTGCAGGATGCTACTAATGTACCAATATGGAGCAAGATCCGTAAAATGTGCAGTTTGCAATTTTGTAACATCTGTTGGGGTCAGTGGTTTACTAATGCCTCAGGAAGCACCACTGAGCAGAAGTTCAGCACTTAAATCATACTATAGCAAAGTCATTACAGACTCTACAACCTTTGTTTTGGTAGTTACATATCTTCCATAA 534 0.4457 MPVPLAPYPTPPAPPENGAQSQLVCSGCRNLLLYPVGATSVYCAVCNAVTPVPPPGNDYYFVGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSGLLMPQEAPLSRSSALKSYYSKVITDSTTFVLVVTYLP 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0849 177 Pfam LSD1 zinc finger 109 133 IPR005735 -
Lal16g0849 177 Pfam LSD1 zinc finger 25 49 IPR005735 -
Lal16g0849 177 Pfam LSD1 zinc finger 71 95 IPR005735 -
Lal16g0849 177 SUPERFAMILY Multiheme cytochromes 25 130 IPR036280 -
Lal16g0849 177 PANTHER PROTEIN LSD1 1 140 IPR040319 -
Lal16g0849 177 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 68 97 IPR005735 -
Lal16g0849 177 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 106 136 IPR005735 -
Lal16g0849 177 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 22 51 IPR005735 -
Lal16g0849 177 PANTHER PROTEIN LOL1 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0849 Lal-Chr16 5518220 5520370 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lal16g0849 zf-LSD1 5.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0849 - - pvy:116146777 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0849 16 5518220 5520370 Lal15g0823 15 6059187 6062280 LSH
Lal16g0849 16 5518220 5520370 Lal23g1269 23 13779364 13781466 LSH
Lal16g0849 16 5518220 5520370 Lal15g0823 15 6059187 6062280 PCT
Lal16g0849 16 5518220 5520370 Lal23g0780 23 10331397 10334787 PCT
Lal15g0823 15 6059187 6062280 Lal16g0849 16 5518220 5520370 PCT
Lal23g0780 23 10331397 10334787 Lal16g0849 16 5518220 5520370 PCT