Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0847 ATGGATTCTCAACCACCACCTCCTTCTTCATCATCCATGATGGAACCCATCTCATTCGTTTCACATCCTTTGATGAGCCCTAGTTCCACCATGCTTGCACCAGCAACTGCTCGATTCCCTTACCAGCAAGTTCCTCCTCCGTCATTGCCGTCGGTGATCCCTTCTGAGCCCTTCACTACCGCCGCCGTTGTCACAACTACCATCCCTTACGACGGTTCCTTAAACTCGTCCGCGTTGAACCCTTCTGGCCCCGCCAAAAAGAAGAGAGGCCGTCCCAGGAAGTACTCGCTTGATAGCAACGTTGCTCTAGGCTTGGCCCCTACTTCTTCCACCGGACACGGTGGTGATAACGGCGGAGGAAGTGGAGGTGGTGATTTGAGTGGCACAATGTCCACCGAAGGTCCTGTGAAGAGGCCTAGGGGAAGACCTCCGGGCTCTGGAAAGAAACAGTTGGATGCTCATGGTGCTGGTGCTGTTGGATTTAAGCATCATGTGATCTTTGTCAATTCTGGCGAGGGTAGATGCATACAAATTAGATTCGCTGATTTGGCCGGAGAATCGCGAATGGATTCGCGAATACCAATTTGCGGTGCTTTTGCGACCCAATACACCTTAATTCGCGTATTGATACCCAGTTTCAAGCGAACCACCATTATTGAAGATGTTGTTTTCATCATCCTGAGATTCAAATCGTCATATGGTTTTAGGCAGGAAAGGGGAGAGGAGGAAAGAGGATACGTTATAGACTGGCCATTGAAGAAGAAGATACAGGCATGA 777 0.4981 MDSQPPPPSSSSMMEPISFVSHPLMSPSSTMLAPATARFPYQQVPPPSLPSVIPSEPFTTAAVVTTTIPYDGSLNSSALNPSGPAKKKRGRPRKYSLDSNVALGLAPTSSTGHGGDNGGGSGGGDLSGTMSTEGPVKRPRGRPPGSGKKQLDAHGAGAVGFKHHVIFVNSGEGRCIQIRFADLAGESRMDSRIPICGAFATQYTLIRVLIPSFKRTTIIEDVVFIILRFKSSYGFRQERGEEERGYVIDWPLKKKIQA 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0847 258 MobiDBLite consensus disorder prediction 1 30 - -
Lal16g0847 258 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Lal16g0847 258 SMART AT_hook_2 137 149 IPR017956 GO:0003677
Lal16g0847 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 77 173 IPR039605 GO:0003680
Lal16g0847 258 MobiDBLite consensus disorder prediction 102 116 - -
Lal16g0847 258 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Lal16g0847 258 PRINTS AT-hook-like domain signature 135 146 IPR017956 GO:0003677
Lal16g0847 258 PANTHER PPC DOMAIN-CONTAINING PROTEIN-RELATED 77 173 - -
Lal16g0847 258 MobiDBLite consensus disorder prediction 13 30 - -
Lal16g0847 258 MobiDBLite consensus disorder prediction 70 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0847 Lal-Chr16 5501461 5502667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0847 86 172 AT-hook Motif Nuclear Localized (AHL) Family AT5G46640 56.667 2.22e-17 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0847 - - var:108323770 125.176