Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0846 ATGGAGTTATCAAACACACCATTAGACTCATCAGCACCAACCTCCTGGTTATCTGATTTCGATATGGATGATTATAATTTCTTTCTGGAGGAATGCAACTTAGATATTGATGATAAAGAGTTTCTTTCACATGACATAGCAAGTGCAATGCAGGGGAACACAAGTAGCAACTCATCCAGCATCACTGAAAATTTGTCACAAAAACTTTCTCCCTCATCCTCAATTTTATCTTTTGATCAGTCTCAGATTCTGTCTTTTACCAACAACACTGCACAGTTTTATGGGTTTGATAGTACCTTAAACCCTCCAAAACAAAATGAGACGGTGTCAGTGTCATTGCCGCAGTTAGGAAATACACTAATCTCAACTCAAACAACAGAAGGAGCCTCAAAAAATCAAAACTGTGCAACAAAAACCACACTTGGTAAGAGATCTGCATCTCATTCTCGTGATCACATCATAGCTGAGAGAAAGCGAAGAAAGAAGCTAAGCCAGAGCTTCATTGCTCTTGCAGCCCTTATTCCTGGTCTAAAGAAGGCATATCCTCTTAATATAACACATTTGTCTCATAAAATGGACAAGGCTTCTATACTAGGGGATGCTATTAAGCATGCTAAAGAGCTTAAAGAGCGTGTAGCAATTTTGGAAGAAGATAGCAAGAAGACAAGGGTGGTGGTTCTGAAGAATGGAGATAATGATGATTCCTCATCATGTGATGATGAAAGCATTGAAAATGCAAGTGGCAGTGAACAACTCCTCCAAGTGGAAGCAAGAATGTCAGGGCAAGAGGTGCTACTTCGGATCCATTGTCATAGGCAAAAGGGTCTTCTCGTCAAAATATTGGAACAGATTCAAAGCCTGAACCTCTTTGTTGTCAATAGTAGTGTCTTACCCTTTGGAGATTCTACTCTTGAGATAACTTTCATTGCCCAGATGGGCGAAGATTACAATTTGACCATAAAGGATCTTGTAAAGAACATACGCATGGCTACATTGAAGTGTTTGTCTGTTATAATAACGTGA 1023 0.3939 MELSNTPLDSSAPTSWLSDFDMDDYNFFLEECNLDIDDKEFLSHDIASAMQGNTSSNSSSITENLSQKLSPSSSILSFDQSQILSFTNNTAQFYGFDSTLNPPKQNETVSVSLPQLGNTLISTQTTEGASKNQNCATKTTLGKRSASHSRDHIIAERKRRKKLSQSFIALAALIPGLKKAYPLNITHLSHKMDKASILGDAIKHAKELKERVAILEEDSKKTRVVVLKNGDNDDSSSCDDESIENASGSEQLLQVEARMSGQEVLLRIHCHRQKGLLVKILEQIQSLNLFVVNSSVLPFGDSTLEITFIAQMGEDYNLTIKDLVKNIRMATLKCLSVIIT 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0846 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 208 IPR011598 GO:0046983
Lal16g0846 340 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 10 52 - -
Lal16g0846 340 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 56 336 - -
Lal16g0846 340 Pfam Helix-loop-helix DNA-binding domain 152 208 IPR011598 GO:0046983
Lal16g0846 340 Gene3D - 139 224 IPR036638 GO:0046983
Lal16g0846 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 221 IPR036638 GO:0046983
Lal16g0846 340 SMART finulus 153 214 IPR011598 GO:0046983
Lal16g0846 340 PANTHER BHLH TRANSCRIPTION FACTOR 10 52 - -
Lal16g0846 340 PANTHER BHLH TRANSCRIPTION FACTOR 56 336 - -
Lal16g0846 340 Coils Coil 198 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0846 Lal-Chr16 5492061 5494268 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0846 132 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.584 3.76e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal16g0846 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0846 - - lang:109330753 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0846 16 5492061 5494268 Lal15g0817 15 5980345 5984294 LSH