Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0845 ATGATGCAGATTTCATCAACCAAGTACACACCTGAATTTTTTCAGGGAGTGGAGGATCAAACTTTCTTTCATCAAAACCAAATGGATTCTTTTGCATACCTTCTTGATGATCTTGACTTCAATCCTTACTCCGCATCCACAGAGAGCAACAATTCCTCTCAGAAGCGCTTCAACTATGAAACCACACAAAATGATTTCCCTATTGATAGTCCTGATCATTCTTTTGTTACACCAGCAAGACCAACCAAGCAACTCAAATCTATGAGTACTACTTGGAATCTTTCTAATTCCACTTCATCATCTCAACTCATTTCTTTTGACCGCTCCAATGCTTCTTCTTCAGTTGCTTCCCAGCAATATTACAACCTTCATACCAAGCCTAAATTGGAGAGTACTGGGTGTAGTGAAAACTTGGATTTCGCTTATGAGGACAAAATTAATTTTCAAAATTATGATAAACAAGCAAACAAGGCTAACACTGCGACGACTATGAGGAACACAACACAAGCTCAAGATCATGTATTAGCGGAAAGGAAAAGAAGGGAAAAGCTTAGCCAGAGGTTCATTGCTCTTTCAGCCATGGTTCCTGGACTCAAGAAGATGGACAAGGCTACTGTGTTGGGAGATGCTATAAAATATCTGAAACAGCTACAAGAACGGGTGAAGATACTGGAAGAACATGCAGCTGAGAAAACAACTGAATCAGCGATGTATGTTAAGAGATCTATTCTCTTCGCAGATGATGATAATAGGTCTTGTTCTGATGAAAACTCTGACAAGCCAATCCCTGAAATAGAAGCTAGAGTTTGTGGCAAAGAGGTACTAATCAGAGTTCACTGTGACAAACACAATGGTCGATTGGCTGCAATACTCAATGAGTTAGAAAAGTATAATCTCACTATTCAGAGTAGCAGTATTTTGCCCTTTGGGAATAACAATCTTGACATAACCATTGTTGCTCAGGTAAATACCACTAACTTCTGA 984 0.3913 MMQISSTKYTPEFFQGVEDQTFFHQNQMDSFAYLLDDLDFNPYSASTESNNSSQKRFNYETTQNDFPIDSPDHSFVTPARPTKQLKSMSTTWNLSNSTSSSQLISFDRSNASSSVASQQYYNLHTKPKLESTGCSENLDFAYEDKINFQNYDKQANKANTATTMRNTTQAQDHVLAERKRREKLSQRFIALSAMVPGLKKMDKATVLGDAIKYLKQLQERVKILEEHAAEKTTESAMYVKRSILFADDDNRSCSDENSDKPIPEIEARVCGKEVLIRVHCDKHNGRLAAILNELEKYNLTIQSSSILPFGNNNLDITIVAQVNTTNF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0845 327 Gene3D - 164 231 IPR036638 GO:0046983
Lal16g0845 327 CDD bHLH_AtNAI1_like 170 242 - -
Lal16g0845 327 Coils Coil 207 234 - -
Lal16g0845 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 236 IPR036638 GO:0046983
Lal16g0845 327 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983
Lal16g0845 327 PANTHER BHLH TRANSCRIPTION FACTOR 1 326 - -
Lal16g0845 327 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 326 - -
Lal16g0845 327 SMART finulus 174 223 IPR011598 GO:0046983
Lal16g0845 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0845 Lal-Chr16 5478763 5484501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0845 2 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.182 8.39e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal16g0845 HLH 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0845 - - gmx:100798011 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0845 16 5478763 5484501 Lal15g0816 15 5968794 5971856 LSH
Lal16g0845 16 5478763 5484501 Lal23g1272 23 13807088 13811050 LSH
Lal16g0845 16 5478763 5484501 Lal15g0816 15 5968794 5971856 PCT
Lal15g0816 15 5968794 5971856 Lal16g0845 16 5478763 5484501 PCT