Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0840 ATGGATCTAGATCACGATGCTAGTATCTCAGGTCTCCACCTTGTTCTAGGGTTAGCTTTGACTAGTAAGACACATAAAGAAACTTTAACTCCATCATCACCACAATCCAACAAGGTTGTTGTTGATGATCATTTTGATCTTATTAGGGCAACATCAAAGAAACCCTACTCTGAGGATGGGCCATCTTTAACGTTGGCCCTGTCTGGTGAAAATTACAATCTCATCAATCAAGTGACTCTTGACTTGTCCACACAAACTTCACCTCTGAGCACGGTTTCATCCTTCTCAGATGGAGGGGTGAAGAGGGAGAGAGAGCTTAGTAGTGAAGAGATAGAGAGGGTTTCTTCAAGAGTAAGTGGTGATGAAGATGAAGATGCTACCATTGCTAGGAAGAAACTTAGGCTTAACAAAAATCAATCTGCTATGCTAGAAGAGAACTTCAAGCAACATAGCACTCTCAACCCAAAACAAAAGCAAGCTTTAGCTAAGCAGTTAAATCTACGACCTCGACAAGTTGAGGTTTGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAACAAACAGAAATGGACTGCGAGTTCCTAAAGAAATGTTGTGAAACATTGACAGATGAAAACATGAGGCTACAGAAGGAGCTGCAAGAGCTGAAGGCACTGAAATTATCACAACCCTTATACATACCTATGTCTGCAACCACCATGTGCCCTTCTTGTGAGAGGCTCAGTGGTGGTGGTAGTAGTGGTGGCGCTTCCAATAAGAGGACCCCATTTTCCATGTCAATGGCTGCTAAACCTCACTTCTATAACCCATTCAACAATCCTTCAGCAGCATGTTGA 837 0.4277 MDLDHDASISGLHLVLGLALTSKTHKETLTPSSPQSNKVVVDDHFDLIRATSKKPYSEDGPSLTLALSGENYNLINQVTLDLSTQTSPLSTVSSFSDGGVKRERELSSEEIERVSSRVSGDEDEDATIARKKLRLNKNQSAMLEENFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEMDCEFLKKCCETLTDENMRLQKELQELKALKLSQPLYIPMSATTMCPSCERLSGGGSSGGASNKRTPFSMSMAAKPHFYNPFNNPSAAC 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0840 278 Gene3D - 135 184 - -
Lal16g0840 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 44 278 - -
Lal16g0840 278 SMART HOX_1 128 190 IPR001356 GO:0003677
Lal16g0840 278 CDD homeodomain 130 187 IPR001356 GO:0003677
Lal16g0840 278 ProSiteProfiles 'Homeobox' domain profile. 126 186 IPR001356 GO:0003677
Lal16g0840 278 PANTHER - 44 278 - -
Lal16g0840 278 MobiDBLite consensus disorder prediction 86 107 - -
Lal16g0840 278 Pfam Homeobox associated leucine zipper 186 220 IPR003106 GO:0006355|GO:0043565
Lal16g0840 278 Pfam Homeodomain 130 184 IPR001356 GO:0003677
Lal16g0840 278 ProSitePatterns 'Homeobox' domain signature. 161 184 IPR017970 GO:0000981|GO:0006355
Lal16g0840 278 SMART halz 186 229 IPR003106 GO:0006355|GO:0043565
Lal16g0840 278 SUPERFAMILY Homeodomain-like 124 187 IPR009057 -
Lal16g0840 278 Coils Coil 192 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0840 Lal-Chr16 5439779 5441903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0840 1 278 Homeobox Transcription Factor Family AT4G37790 56.610 1.67e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal16g0840 Homeodomain 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0840 K09338 - gmx:100784129 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0840 16 5439779 5441903 Lal15g0207 15 1433386 1434850 LSH
Lal16g0840 16 5439779 5441903 Lal23g0790 23 10417104 10419774 PCT
Lal23g0790 23 10417104 10419774 Lal16g0840 16 5439779 5441903 PCT