Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0834 ATGGAAGAGAGGAATGATGCTGAGAAAGTTGATGAAGTTATGCTACCAGGGTTCAGGTTTCATCCAACTGATGAGGAGCTTGTTGGGTTTTACCTGAAGAGAAAGATTCAGCAATGGCCTATGTCTATTGAGCTAATCAAACAACTTGATATCTATAAATATGATCCTTGGGATCTTCCAAAGTTGGCCTCAACTGGGGAGAAAGAGTGGTATTTCTATTGTCCCAGAGACAGAAAATACAGGAACAGTGCAAGGCCTAATAGGGTAACAGGAGCTGGGTTTTGGAAAGCTACAGGGACTGACCGACCTATCTACTCCTCAGAGGGTTCTAAGTGTATTGGCCTCAAGAAATCTTTAGTCTTCTACAAAGGTAGAGCTGCTAAAGGGGTCAAAACTGATTGGATGATGCATGAGTTCAGATTACCTTCTCTCACAGACTCATCACCATCTCCAAAGAAGTATGTAGACAAGACCATTCCCACAAATGATTCGTGGGCAATATGCAGGATTTTCAAGAAAACCAATGCTACAGCTCAAAGAGCTCTCTCTCACTCTTGGGTCTCTCCCTTACCTGAAACAAGGGCCTCTGATATGCTAACCAATGATCGAAACAGCACCCATTTTTGTTCATCAAACATGCCACTGACAAAGCAAACTGGCTTAGTCAGCCAGTTTTGTAACATTAACCACAATGACACACATCACTTAACTACTAGTATTAGCACTCTTTGTCCTTTAGATGTTGCTTCTTATAACAAATCCATTATCAATCCATTGCTTTTCAAGCCCTTTGATCTACCCAATTCAAATGGACACATTAGCACCGGCTTAATGTATTCAACTCCTCTTGAAACATCTACAACTAGTGCCAAATCTACAGTTGATGCTTCTTCCTTGCTGTTGAATATGTCATCTTCTGTGCTAGGAGATTTTAGTAAAACCTGTGAAGGAACAACTACAAACTTTGGTGTGATGCAAGAGCACAATAATGGTTACTCAATACCATTACAATGTGAAATGCAAAGGACCATTGGCAACCAATATGACAGCGTATTGGTGAAGATTCCTAATATAAATGTGCCTTGTATTGATGAACAAGAGTTGGAAAAAGTGCGATCCATTGGGTTTCCACTCAGTATGCCTAATTTCAACATTGGAGATGCATGGAAGTCAAATCTGATTTGGGATTCTTCCTCTTGTCCTTGTGATTTTGTGTCATCTAGTTAG 1227 0.4042 MEERNDAEKVDEVMLPGFRFHPTDEELVGFYLKRKIQQWPMSIELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSSPSPKKYVDKTIPTNDSWAICRIFKKTNATAQRALSHSWVSPLPETRASDMLTNDRNSTHFCSSNMPLTKQTGLVSQFCNINHNDTHHLTTSISTLCPLDVASYNKSIINPLLFKPFDLPNSNGHISTGLMYSTPLETSTTSAKSTVDASSLLLNMSSSVLGDFSKTCEGTTTNFGVMQEHNNGYSIPLQCEMQRTIGNQYDSVLVKIPNINVPCIDEQELEKVRSIGFPLSMPNFNIGDAWKSNLIWDSSSCPCDFVSSS 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0834 408 ProSiteProfiles NAC domain profile. 14 173 IPR003441 GO:0003677|GO:0006355
Lal16g0834 408 Gene3D NAC domain 23 178 IPR036093 GO:0003677|GO:0006355
Lal16g0834 408 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 404 - -
Lal16g0834 408 PANTHER PROTEIN FEZ ISOFORM X1 1 404 - -
Lal16g0834 408 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Lal16g0834 408 SUPERFAMILY NAC domain 12 173 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0834 Lal-Chr16 5389423 5391568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0834 1 259 NAC Transcription Factor Family AT1G26870 65.672 4.96e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal16g0834 NAM 3.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0834 - - vun:114179488 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0834 16 5389423 5391568 Lal16g0834 16 5389423 5391568 ECH
Lal16g0834 16 5389423 5391568 Lal15g0806 15 5862908 5865377 LSH