Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0833 ATGGTTCAACGTCTCACCTACCGCAAGCGTCACAGCTACGCCACCAAGTCCAACCAACACAGGGTTGTCAAAACCCCTGGTGGAAAGCTTGTTTACCAGACCACTAAGAAGAGAGCTAGCGGTCCTAAATGCCCGGTTACTGGAAAGAGGATTCAGGGAATTCCTCATTTAAGGCCTGCAGAGTACAAGAGGTCAAGGCTATCCCGAAACCGGAGGACTGTGAATCGTGCATATGGTGGGGTTTTATCAGGAGGTGCTGTCAGAGAAAGGATTATTCGAGCCTTTTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTGTTGAAGATCCAAAAGGCAAAAGAAAAGCAAGCTTCAAAAGCTTGA 363 0.4683 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKQASKA 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0833 120 Pfam Ribosomal protein L34e 1 96 IPR008195 GO:0003735|GO:0005840|GO:0006412
Lal16g0833 120 PANTHER 60S RIBOSOMAL PROTEIN L34 1 120 IPR008195 GO:0003735|GO:0005840|GO:0006412
Lal16g0833 120 Gene3D - 39 120 - -
Lal16g0833 120 Gene3D - 1 37 - -
Lal16g0833 120 PRINTS Ribosomal protein L34 signature 13 26 IPR008195 GO:0003735|GO:0005840|GO:0006412
Lal16g0833 120 PRINTS Ribosomal protein L34 signature 26 43 IPR008195 GO:0003735|GO:0005840|GO:0006412
Lal16g0833 120 PRINTS Ribosomal protein L34 signature 44 54 IPR008195 GO:0003735|GO:0005840|GO:0006412
Lal16g0833 120 PRINTS Ribosomal protein L34 signature 66 88 IPR008195 GO:0003735|GO:0005840|GO:0006412
Lal16g0833 120 ProSitePatterns Ribosomal protein L34e signature. 15 28 IPR018065 -
Lal16g0833 120 PANTHER - 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0833 Lal-Chr16 5386201 5388387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0833 1 119 Cytoplasmic Ribosomal Protein Gene Family AT1G69620 92.437 7.61e-77 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0833 K02915 - zju:107405512 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0833 16 5386201 5388387 Lal16g0833 16 5386201 5388387 ECH
Lal16g0833 16 5386201 5388387 Lal15g0805 15 5859682 5862241 LSH
Lal16g0833 16 5386201 5388387 Lal23g0798 23 10479901 10482052 LSH