Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0832 ATGGATTTGACACACACCACAGGCACGGATACTCAAACCCCACCACCAATCCAACCCATCAAACTTAACCCATCAAAGTCCTTATCTTTCACCAACGGCACGCTCAAGCCCCACACCACCACCGTCCCTCCGCCTTCACAACCACCATCCATGGTGGTTTCTTACAAAGAATGTCTCAAAAATCACGCTGCCAGCATTGGAGGCCATGCACTTGATGGCTGTGGCGAATTCATGCCTTCCTCCACTACCAACCCCACCGACCCTCGCTCCCTCAAATGTGCTGCTTGTGGCTGCCACCGTAACTTTCACCGCCGTGACCGTCAAGAACAACAACAACCACCGCCACCCAATTTCCTCACTTGCTTCTACTCCACCAACCCTTCTTCAGTCACACCCACAGCCCCACCACCACAACCACCACCGCCACAACTCCCCCACCGTGCTATGAGCCAAAGTACAAGCCCAAGTCTCAGCTCTAGCCCAAGCCACAGTCATAGCCCCATGTCATCAACCCCTTCATCGCCACCACCACTCTCTCACTTGCCACCTTCATATTCAGCACCCCACATGCTCTTATCACTTGGAAACAACAACAATGCTTATTCTATTGACCATCAAAACAGAAACTTTCACTCTTCATCGTTGGTGATGAAAACTGAGACTATTAACCTAAGTGGTAAAAAGAGGTACAGAACCAAATTCAGCCAGGAGCAGAAGGAGAAGATGTTTAACTTCTCTGAGAAATTGGGTTGGAGAATGCAAAAGAGTGATGATGGATCTGTTCAAGAGTTCTGCAATGACATTGGTGTCCCTAGAGGGGTCTTCAAAGTTTGGATGCACAACAACAAGAACACTCTAAGGAAGAAATCAGAAGTGGGAAATGATGGTAGTACTCCTCAGATTGAAAAGACTAATGGCAATGGTGATGATATTAACAACTCTTTTAACATTAATAGCAGCAGCAACAACAATGACATTCACAAAAATGAAGACAACTGTGTTGATGTTCATAAGCGTGCATCTCCCAAAATGCCCATACTTGCTTGTCCAACACAGTGA 1059 0.4703 MDLTHTTGTDTQTPPPIQPIKLNPSKSLSFTNGTLKPHTTTVPPPSQPPSMVVSYKECLKNHAASIGGHALDGCGEFMPSSTTNPTDPRSLKCAACGCHRNFHRRDRQEQQQPPPPNFLTCFYSTNPSSVTPTAPPPQPPPPQLPHRAMSQSTSPSLSSSPSHSHSPMSSTPSSPPPLSHLPPSYSAPHMLLSLGNNNNAYSIDHQNRNFHSSSLVMKTETINLSGKKRYRTKFSQEQKEKMFNFSEKLGWRMQKSDDGSVQEFCNDIGVPRGVFKVWMHNNKNTLRKKSEVGNDGSTPQIEKTNGNGDDINNSFNINSSSNNNDIHKNEDNCVDVHKRASPKMPILACPTQ 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0832 352 Gene3D - 217 288 - -
Lal16g0832 352 MobiDBLite consensus disorder prediction 111 129 - -
Lal16g0832 352 Pfam ZF-HD protein dimerisation region 53 107 IPR006456 -
Lal16g0832 352 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 227 284 IPR006455 -
Lal16g0832 352 MobiDBLite consensus disorder prediction 105 184 - -
Lal16g0832 352 MobiDBLite consensus disorder prediction 1 23 - -
Lal16g0832 352 MobiDBLite consensus disorder prediction 289 326 - -
Lal16g0832 352 MobiDBLite consensus disorder prediction 130 146 - -
Lal16g0832 352 MobiDBLite consensus disorder prediction 291 326 - -
Lal16g0832 352 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 106 IPR006456 -
Lal16g0832 352 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 55 106 IPR006456 -
Lal16g0832 352 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9-LIKE 16 314 - -
Lal16g0832 352 MobiDBLite consensus disorder prediction 147 169 - -
Lal16g0832 352 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 314 - -
Lal16g0832 352 SUPERFAMILY Homeodomain-like 219 288 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0832 Lal-Chr16 5381709 5383127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0832 1 294 ZF-HD Transcription Factor Family AT5G15210 39.799 7.18e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal16g0832 ZF-HD_dimer 6.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0832 - - gmx:100814924 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0832 16 5381709 5383127 Lal16g0832 16 5381709 5383127 ECH
Lal16g0832 16 5381709 5383127 Lal15g0804 15 5855523 5856859 LSH
Lal16g0832 16 5381709 5383127 Lal23g0800 23 10495642 10497239 LSH