Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0831 CGGATCGTTTACGCGGAAGACAAAAACAAGAAGGAAATTATCAACGCCAAGAAGAACACCATTAATGAAAATGACCATAATACCCTTTCCTGCCGTTTAACACTTGTCTCGACCTCCCTATATATACGCCAGAATGCCATTTTCATATCACAGTTTCTCTCTCCTCTCTCTTTATCTAAATTCTTTTTCTATTTTTTGCATTCCTCTCCCTCTTACATATTACCCATTAATCCGGGGTTTTGGTTTGGTTTAAAAAAAATTAAAATGAGTGATCATTTGGTGCTGTATGTGGACCGGTTGGTACGGCCGGTTCCGGTTGAGCCGTTGACTCAACACCCGGCTCAGCCTTCTCCTGAGCCTTCGCCGTCAATGGATGCTATGGCAGCGGAGGTTGACAGAGACGGCGAGGAGGAGCCACTGTTGCAGATGGCGGAGTGTCGCATTTGTCAGGAGGAGGACAGTATTAACAATCTAGAGTCACCTTGCGGATGCAGTGGCAGCCTTAAGTATGCTCACAGAAAGTGCATCCAGCATTGGTGCAACGAGAAAGGTGACATAACTTGTGAGATATGTCATAAGCCCTATCAACCTGGTTATACTGCTCCGCCACCTTGTCCACGTCCTGAAGAAACTACAATTGATATTGTTCGAGGCTGGACAATCTCTGGCACACCTTTGGACCTGCATGATCCTCGACTCCTGGCAATTGCAGAGGCAGAACGCCAATTCTTGGAAGCCGAATATGATGGATATGCTGCCTCTAATGCCAGTGGAGCTGCATTCTGCCGTTCAGCTGCTCTAATTTTAATGGCACTTTTACTCTTGAGGCATGCACTTTCTGTCATAGATGTTGATGCTGAAGATGATCCATCCACCTTTTTCTCTCTTTTCTTGCTTCGAGCAGCTGGTTTCCTATTGCCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAGCGTAGGCGACAGAGACAAGAGGCTGCTGCACTAGCTGCAACCCAAGTTGCTTACGTTCTACAATCCGGGCACCATAGGGGACTACAATTTGCCATAGCACCAGGACCAACGGTGGTGAATACACACCTGGAACAAGTGTAG 1098 0.4663 RIVYAEDKNKKEIINAKKNTINENDHNTLSCRLTLVSTSLYIRQNAIFISQFLSPLSLSKFFFYFLHSSPSYILPINPGFWFGLKKIKMSDHLVLYVDRLVRPVPVEPLTQHPAQPSPEPSPSMDAMAAEVDRDGEEEPLLQMAECRICQEEDSINNLESPCGCSGSLKYAHRKCIQHWCNEKGDITCEICHKPYQPGYTAPPPCPRPEETTIDIVRGWTISGTPLDLHDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSAALILMALLLLRHALSVIDVDAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAYVLQSGHHRGLQFAIAPGPTVVNTHLEQV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0831 365 Pfam Protein of unknown function (DUF3675) 197 315 IPR022143 -
Lal16g0831 365 ProSiteProfiles Zinc finger RING-CH-type profile. 138 198 IPR011016 GO:0008270
Lal16g0831 365 Coils Coil 234 254 - -
Lal16g0831 365 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 89 353 IPR033275 -
Lal16g0831 365 SMART ringv_2 145 192 IPR011016 GO:0008270
Lal16g0831 365 CDD RING_CH-C4HC3_MARCH 146 192 - -
Lal16g0831 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 89 353 - -
Lal16g0831 365 SUPERFAMILY RING/U-box 144 196 - -
Lal16g0831 365 Pfam RING-variant domain 146 191 IPR011016 GO:0008270
Lal16g0831 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 201 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0831 Lal-Chr16 5367366 5371274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0831 116 195 C3H Transcription Factor Family AT2G22120 33.735 3.34e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0831 - - ahf:112734090 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0831 16 5367366 5371274 Lal16g0831 16 5367366 5371274 ECH
Lal16g0831 16 5367366 5371274 Lal23g0801 23 10505506 10509622 LSH