Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0830 ATGGATCTGCAAAATGTGAAAAACCAAAGCTTGCGTTTGGTTCTGTCTACTGATGCCAAGCCTAGGCTAAAATGGACTCCTGAGCTTCACCAAAGATTCATTGAGGCAATTAATCAACTTGGAGGTGCAGAAAAGGCTACCCCAAAGAGTATTATGAGGGTGATGGGGATTCCAGGACTAACATTGTACCACCTCAAGAGCCATTTACAGGCATTTACCTTTTGTGATTATAGCATCATTCTTTTTTTCATTCACTGA 258 0.4109 MDLQNVKNQSLRLVLSTDAKPRLKWTPELHQRFIEAINQLGGAEKATPKSIMRVMGIPGLTLYHLKSHLQAFTFCDYSIILFFIH 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0830 85 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 72 IPR044848 GO:0003700
Lal16g0830 85 PANTHER MYB-RELATED PROTEIN 2 9 72 - -
Lal16g0830 85 Pfam Myb-like DNA-binding domain 22 70 IPR001005 -
Lal16g0830 85 SUPERFAMILY Homeodomain-like 19 73 IPR009057 -
Lal16g0830 85 Gene3D - 19 74 - -
Lal16g0830 85 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 20 72 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0830 Lal-Chr16 5360538 5365033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0830 13 72 G2-like Transcription Factor Family AT4G13640 73.333 6.12e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal16g0830 Myb_DNA-binding 2.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0830 - - lang:109340795 134.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0830 16 5360538 5365033 Lal15g0796 15 5815031 5816700 LSH