Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0828 TTAAAGAAAATGAAAGCAAGTGTTCTATACTCTTCATCACAACAACAAAACACAAACTCATCTTCATATTCTTCTGCTCATTCTCCTTCAATAGGAATGGTCTATGCAGACATGAGTGCTCTCTCTCTTTGCCCCAATTATGGTGCTGCTGTTTCTACATCTCAAGATTGTTTTGCCCCTAACGGGGGTTCAAGCTGGGGTTTTCCATTCACGAGGGAATGCCATATTGCAAGAAACTTTGAGGAGCAACCCAACAATGGTGATATTGTTATGGAGGGTAAAGGGTCTGATTGCAGTGATGGGGTTGGGGAAAACAGTGAGAAAACTAACCAAAATGCTAACACTAATGAAGAGAACCCTAATGAGAATCATGTCAGTGGAAAAGAGATAGATACTACTGGGCATTCCAAACTCTGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTCAAAGAACTTGTTGCTCTTTATGGCCCCCAGAACTGGAACCTCATAGCTGAAAAGTTAGAAGGAAGATCAGGTAAGAGTTGTAGGCTGAGGTGGTTCAACCAGTTAGACCCAAGGATCAATAGGAGAGCTTTCAGTGAAGAAGAGGAAGAGAGACTAATGCAGGCACATAGGATATATGGTAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGGAGAACAGATAATGCTGTGAAGAATCACTGGCATGTTATAATGGCTAGGAAGTATAGAGAACAATCCAATGCTTATAGGAGGAGGAGGCTGAGTCAATCTTTTTACAGAAGAATGGAGGACGATACTACAAATTTTGTCTCTAAAGACACAACAGCAAGTGGAACAGAACCACCACCTTATTGTATCAATCTCCCAAATAACTTGTCTACTTTCCCATACGCATCATCTTTTCATGGATCTGGTAGTACTGGGATTGAGTGTGGATTGAATAGCTCACCTCACATGATTGGTGGGAGAGAAGCAATAATCTCAAGCAGCAAAAATGTCCCTCCTACTCAGTTTGGCTTGTATGCTGAACAAACACCATCTGAACTATTTTCAGGTGCTAGAAGCAATGAGATGGTGAGTGAGTATTTTAACCAAACCAGATACTGGGACAAGAAACCAAATGATGCACCACCTCCTCAACTTCAAACATATGGTTACTACCCTTATTACAACAAATACCTGATGCCAATGCAACAACATCAAAATAACAATAATTTATACAGTTTCTCATCAAATTCCACAGGCTCAGTGATGTTAAGCAGTGAAGAAGTTTCATTATCATCTGTGGCAGAACAACATAGAGATAATGAAGACACACCTGCAGATGCAATTTCTACACCTCCATTTATTGACTTCCTTGGGGTTGGAGCCACAACAGTATGA 1383 0.4129 LKKMKASVLYSSSQQQNTNSSSYSSAHSPSIGMVYADMSALSLCPNYGAAVSTSQDCFAPNGGSSWGFPFTRECHIARNFEEQPNNGDIVMEGKGSDCSDGVGENSEKTNQNANTNEENPNENHVSGKEIDTTGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSNAYRRRRLSQSFYRRMEDDTTNFVSKDTTASGTEPPPYCINLPNNLSTFPYASSFHGSGSTGIECGLNSSPHMIGGREAIISSSKNVPPTQFGLYAEQTPSELFSGARSNEMVSEYFNQTRYWDKKPNDAPPPQLQTYGYYPYYNKYLMPMQQHQNNNNLYSFSSNSTGSVMLSSEEVSLSSVAEQHRDNEDTPADAISTPPFIDFLGVGATTV 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0828 460 Gene3D - 141 192 - -
Lal16g0828 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 141 187 IPR017930 -
Lal16g0828 460 SUPERFAMILY Homeodomain-like 141 234 IPR009057 -
Lal16g0828 460 MobiDBLite consensus disorder prediction 426 445 - -
Lal16g0828 460 Pfam Myb-like DNA-binding domain 141 187 IPR001005 -
Lal16g0828 460 Pfam Myb-like DNA-binding domain 193 236 IPR001005 -
Lal16g0828 460 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 242 IPR017930 -
Lal16g0828 460 PANTHER MYB TRANSCRIPTION FACTOR 31 458 - -
Lal16g0828 460 SMART sant 192 240 IPR001005 -
Lal16g0828 460 SMART sant 140 189 IPR001005 -
Lal16g0828 460 MobiDBLite consensus disorder prediction 85 130 - -
Lal16g0828 460 CDD SANT 144 185 IPR001005 -
Lal16g0828 460 CDD SANT 195 235 IPR001005 -
Lal16g0828 460 ProSiteProfiles Myb-like domain profile. 141 187 IPR001005 -
Lal16g0828 460 MobiDBLite consensus disorder prediction 102 121 - -
Lal16g0828 460 Gene3D - 194 264 - -
Lal16g0828 460 PANTHER MYB PROTEIN-RELATED 31 458 - -
Lal16g0828 460 ProSiteProfiles Myb-like domain profile. 188 238 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0828 Lal-Chr16 5350448 5352241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0828 31 357 MYB Transcription Factor Family AT1G69560 44.699 2.40e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal16g0828 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0828 K09422 - gmx:100804537 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0828 16 5350448 5352241 Lal16g0828 16 5350448 5352241 ECH
Lal16g0828 16 5350448 5352241 Lal15g0795 15 5806975 5810486 LSH
Lal16g0828 16 5350448 5352241 Lal23g0803 23 10516446 10518256 LSH