Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0827 ATGGAAGGCTGCAGAACAAGCTCTGAACTCCCACCTGGTTTCAGGTTTCATCCAACTGATGAAGAACTCATCGTGTATTACCTTTGTAACCAAGCCACTTCCAAGCCATGTCCTGCTTCCATCATCCCAGAAGTGGATATCTATAAATTTGATCCATGGGAATTGCCAAGTAAAACAGATTTTGGAGAAAATGAATGGTACTTCTTTAGCCCAAGAGAAAGGAAGTACCCAAATGGGGTGAGGCCTAACAGAGCAACTGTGTCAGGGTATTGGAAGGCTACTGGTACAGACAGGGCAATCCATAGTGGGTCTAAGCATATAGGGTTGAGGAAATCTTTGGTCTTTTACAAGGGTAAGCCACCAAAGGGCATAAAGACTGATTGGATTATGCATGAGTATCGACTAGTTGAATCAAAAAGAGAAGCTAGTAGGCAACTTGGGTCCATGAGACTGGATGACTGGGTCTTATATAGGATCTATAAGAAGAAGCACATGGCAAAAGCATTTGAGCCAAAAGAGGAATACCCCTCGGTCCAAATTAATCTTTCAGCACCAAACAATGAGGGTGAACAAGATATGTTGAAGCTACCAAGGACTTGTTCCCTTACTTATCTTTTGGATATGAATTACTTGGGTCCAATTTCACAGATATTATCTGATGGCTCCTACAACCCAACCTTTGATTTTCAACTTAACTCTGCCAATATTGGAACAGACCCATTTGTCAAACCTGAGCTGGTTGATATGGCTAACAATTATGCATCAAGTTCAGGGATGTACCAAGTGAAGCAAAGTAATACTATGAACCAGCCTATATTTTTGAAGCAAGTGCATGATCTGCAAGGATATCACCAATAA 858 0.4138 MEGCRTSSELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDIYKFDPWELPSKTDFGENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDRAIHSGSKHIGLRKSLVFYKGKPPKGIKTDWIMHEYRLVESKREASRQLGSMRLDDWVLYRIYKKKHMAKAFEPKEEYPSVQINLSAPNNEGEQDMLKLPRTCSLTYLLDMNYLGPISQILSDGSYNPTFDFQLNSANIGTDPFVKPELVDMANNYASSSGMYQVKQSNTMNQPIFLKQVHDLQGYHQ 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0827 285 Pfam No apical meristem (NAM) protein 11 135 IPR003441 GO:0003677|GO:0006355
Lal16g0827 285 Gene3D NAC domain 19 167 IPR036093 GO:0003677|GO:0006355
Lal16g0827 285 ProSiteProfiles NAC domain profile. 10 162 IPR003441 GO:0003677|GO:0006355
Lal16g0827 285 PANTHER NAC DOMAIN-CONTAINING PROTEIN 1 6 242 - -
Lal16g0827 285 SUPERFAMILY NAC domain 7 162 IPR036093 GO:0003677|GO:0006355
Lal16g0827 285 PANTHER NAC TRANSCRIPTION FACTOR 56 6 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0827 Lal-Chr16 5339253 5341712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0827 6 217 NAC Transcription Factor Family AT1G69490 66.518 4.38e-110 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal16g0827 NAM 4.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0827 - - gmx:732552 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0827 16 5339253 5341712 Lal16g0827 16 5339253 5341712 ECH