Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0824 ATGGCTACTATATATTCTGCATGTTCAGGCACTGCTTTTCTTTCCCCTACTATTTTTCACAACAAGGGTTTCTCCTTTATAGCTAAAGTGCCACCACTTCATCTCAAAAAGCCTATCCATGCTAAGTCTCTTACTTCTTTTGAAACTGATATATCAGTACCACAAGCAGTTCAAACCTTCTGGCAATGGCTTCAAAAAGAAGGTGTTGTATCAAACAAGACACTAGTGAAGCCAAGTATGGTGCCAGAAGGCTTAGGACTTGTTGCAGTTAAAGATGTTTCTAGGAATGAGGTTGTGTTACAGGTACCTAAGAGGCTGTGGATAAATCCAGATGCAGTGGCAGCTTCAGAGATTGGGAGTTTGTGTAGTGGTTTGAAGCCATGGTTGTCTGTTGCACTGTTTTTGATAAGAGAGAGGTCAAGGGATGATTCTGTTTGGAAGCACTATTTTGGTGTTCTGCCACAGGAAACTGATTCAACTATATATTGGTCAGAGGAGGAGCTTTTAGAGCTTCAAGGTACTCAGCTTCTGAATACAACAGTGAATGTTAAAGAATATGTACAGAATGAATTTGTGAGACTGGAAAAAGAAATCATACTCCCTAACAAGAAGCTTTTCCCTACTATAACATTGGATGACTTCTCCTGGGCATTTGGAATTCTCAGATCAAGGGCATTTTCTCGCCTTAGAAATGAAAATCTAGTCATAATTCCACTAGCAGATTTTATAAACCACAGTGCCAAAGTAACTACACAAGATCATGCTTATGAAGTTAAAGGAGCAGCCGGCTTTTTCTCCCGGGATTACCTTTTTTCCCTAAGAAGCCCCCTCTCTCTCAAGGCTGGGGACCAGGTATATATCCAATATGATTTAAATAAAAGCAATGCCGAGTTGGCTCTGGACTACGGCTTTATCGAACCAAACGCAGATCGGAATGCGTATACCCTGACACTACAGATATCTGAATCAGACCCCTTTTTTGATGACAAACTAGACATTGCTGAGTCCAATGGTTTTGGCAAGACTGCTTACTTTGACATCTTCTTCAACCGCCCGCTTCCAACAGGGTTGCTTACATATCTGAGACTTGTAGCTCTAGGAGGCACTGATGCTTTCCTATTGGAATCACTATTCAGAAACTCCATCTGGGATCATCTCCAATTGCCTGTGAGCCGTGATAATGAGGAGCTAATATGCCGAGTGGTTCGAGAAGCCTGCAAATCTGCTCTTTCTGGTTATCATACAACCATTGAAGAGGATAACAAGTTGAAAGAAACAAATCTAGATTCAAGGCTTGCAATAGCAGTTGGAGTAAGAGAAGGAGAGAAGAAGGTCCTGCAGCAAATTGATGAGATATTCAAGGAGAAAGAATTGGAATTGGACCAGTTAGCATATTATCAAGAAAGGAGACTGAAGGACCTTGGACTCTGTGGAGAAGCTGGTGAAATTATTGGAGGGGACCTTGAAAAGTTCTTTTAA 1479 0.4131 MATIYSACSGTAFLSPTIFHNKGFSFIAKVPPLHLKKPIHAKSLTSFETDISVPQAVQTFWQWLQKEGVVSNKTLVKPSMVPEGLGLVAVKDVSRNEVVLQVPKRLWINPDAVAASEIGSLCSGLKPWLSVALFLIRERSRDDSVWKHYFGVLPQETDSTIYWSEEELLELQGTQLLNTTVNVKEYVQNEFVRLEKEIILPNKKLFPTITLDDFSWAFGILRSRAFSRLRNENLVIIPLADFINHSAKVTTQDHAYEVKGAAGFFSRDYLFSLRSPLSLKAGDQVYIQYDLNKSNAELALDYGFIEPNADRNAYTLTLQISESDPFFDDKLDIAESNGFGKTAYFDIFFNRPLPTGLLTYLRLVALGGTDAFLLESLFRNSIWDHLQLPVSRDNEELICRVVREACKSALSGYHTTIEEDNKLKETNLDSRLAIAVGVREGEKKVLQQIDEIFKEKELELDQLAYYQERRLKDLGLCGEAGEIIGGDLEKFF 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0824 492 Pfam Rubisco LSMT substrate-binding 322 446 IPR015353 -
Lal16g0824 492 PANTHER [FRUCTOSE-BISPHOSPHATE ALDOLASE]-LYSINE N-METHYLTRANSFERASE, CHLOROPLASTIC 37 482 - -
Lal16g0824 492 Gene3D - 306 470 IPR036464 -
Lal16g0824 492 Gene3D set domain protein methyltransferase, domain 1 53 305 - -
Lal16g0824 492 SMART set_7 72 296 IPR001214 GO:0005515
Lal16g0824 492 CDD SET_RBCMT 66 305 IPR044431 GO:0016279|GO:0018022
Lal16g0824 492 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 1 489 IPR011192 GO:0009507|GO:0030785
Lal16g0824 492 SUPERFAMILY SET domain 55 310 IPR046341 -
Lal16g0824 492 ProSiteProfiles SET domain profile. 67 290 IPR001214 GO:0005515
Lal16g0824 492 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 313 484 IPR036464 -
Lal16g0824 492 Pfam SET domain 84 289 IPR001214 GO:0005515
Lal16g0824 492 PIRSF RMT_SET 1 490 IPR011192 GO:0009507|GO:0030785
Lal16g0824 492 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 37 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0824 Lal-Chr16 5316815 5320559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0824 51 245 NAC Transcription Factor Family AT3G56570 25.243 3.20e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal16g0824 SET 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0824 K00592 - gmx:100818113 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0824 16 5316815 5320559 Lal15g0790 15 5696247 5700844 LSH