Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0817 ATGGTAGGTGGAAATGGGGAGAACCAACCACCTTCTACGGCGGCGGAAGGTAGTCCACCACGGAGACCCACCATAACTCTCCCTCCACGCACTTCCGTGGACACCCTTTTCAATGGTGGTGGTGGTGGTGATGGGGGAGCCTTTGTCTTCAGCCCTGGTCCAATGAGTCTTGTTTCAAGCTTCTTTGCTGAGAACAATAACGATGAGTATAAGTCTTTTTCTCAGCTCCTTGCCGGTACCATGTCTCCGGTGGATCACAAAGGATTTTCCGGTGAAGGTGGTGGTGATGGTGCCTTCAAGCATAATAATAATAATAATAGTAGTAACACACAGTTATCATCACCCTTTTTCATGGTTCCACATGAATTCAGCTCTTCTGGCTTGCTTGATTCACCTACCTTCTTGTTCTCACCTCCTCAGGGGAACTTTGGATTGACACACCAGCAAGCCTTAGCACAGGTCACAGCTCAGGCTGTACAGACAGAACATTCATCCTCTGTATCATTAGTAACTGCAGCTACTTCCGGTACTATACAACGGTTGATGCCACGGTCAGTGCCCGACACTGTGGCAGCAAAGACAGAATCCTTTGATTATTCTCACTCTGAACAAAGATTGCAGTCTTCTGTGAATGGTGATAAGCCTAATGACGACGGCTACAACTGGAGGAAGTATGGGCAGAAACCGGTAAAAGGTAGCGAGTTCCCTCGAGGTTATTATAGGTGTACGCATCCAAACTGTTGTGTCACGAAAAAGGTTGAGCGCTCTCTTGAAGGTCATGTGACCGCAATTATTTATAAAGGAGAGCACAATCATCAATGTCCTAATCCTAATAAGCTAGCAAAAGATACTTCATCTTCGAATGAAAATTCTGATATGCAAGGGAGTTATGATTCAACTTACCAATTTCAAAGTGGAGGTTTAAATAGATTGAAGGAAGGGATAAGTCACTCAATGTCTAAGATGGATCAGGAGTCTAGTCAGGCAACAGCTGAACATGTATCGGGAACAAGTGACGGCGAGGAAGTGGATGATACAAATGATGAGCCTGATCCCAAGAGGAGAAACACAAAACTCAACCTATCAGATCCAGCCTCTTCACACAGGGCTATCACAGAGCCTAGAATCATTGTGCAAACAACAAGTGAAGTGGATCTCTTAGATGATGGGTATAGATGGCGCAAATATGGGCAGAAAGTTGTCAAAGGCAACCCTTATCCAAGGAGCTATTACAAATGCACAACCACAGGCTGCGGTGTTCGGAAGCATGTTGAGAGGGCGTCAACGGATTTTAAAGCCGTCATAACAACTTATGAAGGAAGACATAATCATGATGTGCCAGCAGCTAAGTTTAACAGCCACACCATGGCTAACAATAGTGCATCACAGTTAAAACCACCAAATGCCAAACCCGAGACGAATAGTTTCAGCGGCAGAGGAGTTGGTGCCAATCAGCAGCAGCCCATGGCACGTCTAAGGCTGAAGGAAGAGAAAATAACATAA 1503 0.4538 MVGGNGENQPPSTAAEGSPPRRPTITLPPRTSVDTLFNGGGGGDGGAFVFSPGPMSLVSSFFAENNNDEYKSFSQLLAGTMSPVDHKGFSGEGGGDGAFKHNNNNNSSNTQLSSPFFMVPHEFSSSGLLDSPTFLFSPPQGNFGLTHQQALAQVTAQAVQTEHSSSVSLVTAATSGTIQRLMPRSVPDTVAAKTESFDYSHSEQRLQSSVNGDKPNDDGYNWRKYGQKPVKGSEFPRGYYRCTHPNCCVTKKVERSLEGHVTAIIYKGEHNHQCPNPNKLAKDTSSSNENSDMQGSYDSTYQFQSGGLNRLKEGISHSMSKMDQESSQATAEHVSGTSDGEEVDDTNDEPDPKRRNTKLNLSDPASSHRAITEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTTGCGVRKHVERASTDFKAVITTYEGRHNHDVPAAKFNSHTMANNSASQLKPPNAKPETNSFSGRGVGANQQQPMARLRLKEEKIT 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0817 500 SMART WRKY_cls 216 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal16g0817 500 SMART WRKY_cls 387 446 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal16g0817 500 MobiDBLite consensus disorder prediction 277 303 - -
Lal16g0817 500 MobiDBLite consensus disorder prediction 1 15 - -
Lal16g0817 500 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 18 499 - -
Lal16g0817 500 SUPERFAMILY WRKY DNA-binding domain 214 275 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal16g0817 500 MobiDBLite consensus disorder prediction 457 500 - -
Lal16g0817 500 MobiDBLite consensus disorder prediction 359 373 - -
Lal16g0817 500 MobiDBLite consensus disorder prediction 320 335 - -
Lal16g0817 500 Pfam WRKY DNA -binding domain 388 444 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal16g0817 500 Pfam WRKY DNA -binding domain 217 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal16g0817 500 SUPERFAMILY WRKY DNA-binding domain 379 447 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal16g0817 500 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 499 IPR044810 GO:0003700
Lal16g0817 500 ProSiteProfiles WRKY domain profile. 382 447 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal16g0817 500 MobiDBLite consensus disorder prediction 457 484 - -
Lal16g0817 500 MobiDBLite consensus disorder prediction 269 303 - -
Lal16g0817 500 ProSiteProfiles WRKY domain profile. 211 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lal16g0817 500 Gene3D WRKY domain 372 448 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal16g0817 500 Gene3D WRKY domain 201 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lal16g0817 500 MobiDBLite consensus disorder prediction 1 39 - -
Lal16g0817 500 MobiDBLite consensus disorder prediction 195 220 - -
Lal16g0817 500 MobiDBLite consensus disorder prediction 317 373 - -
Lal16g0817 500 MobiDBLite consensus disorder prediction 195 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0817 Lal-Chr16 5280230 5283547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0817 7 500 WRKY Transcription Factor Family AT2G03340 50.000 9.39e-146 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lal16g0817 WRKY 4.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0817 - - lang:109349541 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0817 16 5280230 5283547 Lal15g0784 15 5638077 5641805 LSH