Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0800 ATGTGGTCTTCCTCTTCACAATTCATAAACATGTTTTCCTTTTCCCTCCCAATGCACTTTCATGGCACCAAACTCAGGGTGGTGGCTGAAGCTTCTGTTGTTGATGATGCATTCCCTTCATTTCTTCCAAACCAAGTTCACCGAATCAAAGACCCATTCGCTCGAAAACTCGCTATGCGTATTCAGAGGCTACCCGTAACTGTTAGTTTCTCTGAAAATCCTATCATGAGTAGCTGTGTGAAGCCATTGATGCAAGACAAAGCAGCAAATCCAGTTGTCCTTCTACATGGTTTCGACAGCTCATGTTTAGAATGGAGATATACATATCCATTGCTTGAGGAGGCTGGTTTTGAGGCATGGGCTATTGATATTCTTGGCTGGGGTTTCTCTGATTTAGGAAAACTTCCTTCATGTGATGTGGTATCAAAGCGCAATCACTTATATCAGTTTTGGAAGTCTCACATCAAAAGGGCAATGATATTGGTTGGTCCAAGCCTTGGCGCTGCGGTGGCCGTAGACTTTGCCATCAATTACCCAGAAGCTGTGGAAAAGCTTGTTCTGATTGATGCTAGTGTATATGCAGAGGGAACAGGAAACCTAGCAACCTTACCCAGGGCATTAGCATATGCTGGGGTGAATATATCTATTCTCTCCAACTTAGCACTCTTAATGCCTTTTTACTGGGGGATTTTATACATGACAATGTTGATCTCGACTAGATGTTTTTACTTCTTTTGTGGGGGCTGGGGAGAGGTATCTGTATTAAAGAGCATTCCGTTACGTGTGTATGCTAACTATTTGACCTTCAGTAACATATCTTTCAGTATCAGCCTTGACTGGACTAATATAGGCCGCTTGCATTGTTTACTGCCCTGGTGGGAGGATGCTACAGTTGATTTTATGACTAGTGGTGGTTATAATGTTGCTTCTCAGATAAAAAAGGTAACGCAGAAAACACTCATCATTTGGGGGGAGAATGACCGCATCATCAGCAATAAGCTTGCAGTGCAACTGCACTGTGATTTATCTGATGCAATTATACGCCAAATACCCGATTGTGGCCATCTTCCTCATGTCGAAAGGCCAGATTCTGTTGTCAAATTCATTGTTGAATTTGTTAAGAGAGACCAAGGCAGCAAGTGA 1143 0.4269 MWSSSSQFINMFSFSLPMHFHGTKLRVVAEASVVDDAFPSFLPNQVHRIKDPFARKLAMRIQRLPVTVSFSENPIMSSCVKPLMQDKAANPVVLLHGFDSSCLEWRYTYPLLEEAGFEAWAIDILGWGFSDLGKLPSCDVVSKRNHLYQFWKSHIKRAMILVGPSLGAAVAVDFAINYPEAVEKLVLIDASVYAEGTGNLATLPRALAYAGVNISILSNLALLMPFYWGILYMTMLISTRCFYFFCGGWGEVSVLKSIPLRVYANYLTFSNISFSISLDWTNIGRLHCLLPWWEDATVDFMTSGGYNVASQIKKVTQKTLIIWGENDRIISNKLAVQLHCDLSDAIIRQIPDCGHLPHVERPDSVVKFIVEFVKRDQGSK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0800 380 SUPERFAMILY alpha/beta-Hydrolases 87 375 IPR029058 -
Lal16g0800 380 PRINTS Alpha/beta hydrolase fold signature 116 131 IPR000073 -
Lal16g0800 380 PRINTS Alpha/beta hydrolase fold signature 161 174 IPR000073 -
Lal16g0800 380 PRINTS Alpha/beta hydrolase fold signature 175 188 IPR000073 -
Lal16g0800 380 PANTHER ALPHA/BETA FOLD HYDROLASE 251 376 - -
Lal16g0800 380 PANTHER ALPHA/BETA FOLD HYDROLASE 22 222 - -
Lal16g0800 380 Gene3D alpha/beta hydrolase 80 230 IPR029058 -
Lal16g0800 380 PANTHER HYDROLASE 22 222 - -
Lal16g0800 380 PANTHER HYDROLASE 251 376 - -
Lal16g0800 380 Gene3D alpha/beta hydrolase 251 377 IPR029058 -
Lal16g0800 380 Pfam Alpha/beta hydrolase family 92 367 IPR000073 -
Lal16g0800 380 PRINTS Epoxide hydrolase signature 96 114 IPR000639 GO:0003824
Lal16g0800 380 PRINTS Epoxide hydrolase signature 116 131 IPR000639 GO:0003824
Lal16g0800 380 PRINTS Epoxide hydrolase signature 175 188 IPR000639 GO:0003824
Lal16g0800 380 PRINTS Epoxide hydrolase signature 350 372 IPR000639 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0800 Lal-Chr16 5185883 5191695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0800 87 373 Acyl Lipid Metabolism Gene Families AT3G10840 23.145 3.06e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0800 - - gmx:100814882 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0800 16 5185883 5191695 Lal16g0800 16 5185883 5191695 ECH
Lal16g0800 16 5185883 5191695 Lal22g0701 22 5054690 5058124 PCT
Lal16g0800 16 5185883 5191695 Lal6g0796 6 5349363 5355045 PCT
Lal16g0800 16 5185883 5191695 Lal18g0917 18 11976728 11983826 PCT
Lal22g0701 22 5054690 5058124 Lal16g0800 16 5185883 5191695 PCT
Lal6g0796 6 5349363 5355045 Lal16g0800 16 5185883 5191695 PCT
Lal18g0917 18 11976728 11983826 Lal16g0800 16 5185883 5191695 PCT