Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal16g0798 | ATGGCGGTATCTGATGGGTCCCCTATCCCACAGATGGTTGGCAATGCTTTTGTGGAGCAGTATTACTCTATTCTGCATCAAAATCCAGACCAGGTTCACAAATTTTACCAGGAATCTAGTGTCCTAAGTCGCCCTGAAGAAGATAGTGCCTTGACAACTGTGACTACCATTGTTGACATTAATAAGAAGATACTTTCGCATGATTATACAAGCTTTAGGGTTGAGATTCTGAGTGCTGATGCTCAGCCTTCATACAAGGATGGAGTAATTGTTCTAGTTACCGGCTGCTTAACTGGAACTGATAATTTGAAAAGGAAGTTTACTCAGTCATTTTTCCTGGCTCCACAGGACAAAGGCTACTTTGTCTTGAATGATGTTTTTAGATATGTTGATGAGTATAATTCAGTTGATATTGAGTCTGTGCCTGCAAATGATGCTGAAGAAAGTGGTCCAGCAGCTGCTGTTATTCCAGAGCCTGAGCCCAATCATGTTCCTGAGAGCATTCCACCTGTACCTAGTCAAACTGTTGTTGTAGACACTGACTCTACTGTCAGCAAAGAAACGAGTCCACCAAAAGAGAATGGAAAATTATCAGTTGCTGAAAAGGTGGTTCCTGTTCATCATGTGAAAGAGCCAAGCCATCAGGAACATCGCCCAACCACTGAGGAAGCTGCTTCTGCTACACAGGAGGGCCTTCCCAAGAAGTCTTTTGCATCCATTGTGAATGCATTGAAAACAAATGCTTCACCCTTCCAAGTAAGGGCTTCACCAGTGAAACCTGTAGAGCAACCACGTGTGTCTAGTGTGCCCGCACCTGAAACACTAGTGCCTAGCACTGTAATTGTATTGGAAAGTAATAATGAGAAATCAGGTAAGGCTCATGCAATATTTGTTGCAAATTTGCCTATGAATGCAACAGTAGAACAACTAGAACATGTTTTCAAGGGTTTTGGGCCCATTAAACCTGATGGTATTCAAGTTAGAAGTAACAGGGGATCTTGTTTTGGCTTTGTTGAATTTGAGTCTGCTACTTCAATGCAAAGAGCACTTGAGGCCTCTCCTCCTGTTATGCTGGACTACCGCAAACTTTCCGTCGAAGAAAGGCGAGCTAATAATGATAGGGCTAGGCGGGGTGGATACAGAAATGACAACTTCCGGAGTCGTGGGAACTTTGGCGGCGGCCGTGGATACTCTGGTAGAAATGATTCTGAGAAACGAGGTGAGTTCTCTGGCAGAGCTCGCGGCGGCAACAATAATAGTGGGTTTAGCAATGGAGAATCTGTGCCAAGGGGTGGTTATCATAATGGAGGAGGAAAGGCTCCTAGTCAACCAGTGAAAGTTCAGTAA | 1347 | 0.441 | MAVSDGSPIPQMVGNAFVEQYYSILHQNPDQVHKFYQESSVLSRPEEDSALTTVTTIVDINKKILSHDYTSFRVEILSADAQPSYKDGVIVLVTGCLTGTDNLKRKFTQSFFLAPQDKGYFVLNDVFRYVDEYNSVDIESVPANDAEESGPAAAVIPEPEPNHVPESIPPVPSQTVVVDTDSTVSKETSPPKENGKLSVAEKVVPVHHVKEPSHQEHRPTTEEAASATQEGLPKKSFASIVNALKTNASPFQVRASPVKPVEQPRVSSVPAPETLVPSTVIVLESNNEKSGKAHAIFVANLPMNATVEQLEHVFKGFGPIKPDGIQVRSNRGSCFGFVEFESATSMQRALEASPPVMLDYRKLSVEERRANNDRARRGGYRNDNFRSRGNFGGGRGYSGRNDSEKRGEFSGRARGGNNNSGFSNGESVPRGGYHNGGGKAPSQPVKVQ | 448 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal16g0798 | 448 | SMART | rrm1_1 | 295 | 366 | IPR000504 | GO:0003723 | |
| Lal16g0798 | 448 | CDD | NTF2 | 10 | 131 | IPR018222 | - | |
| Lal16g0798 | 448 | CDD | RRM_SF | 296 | 366 | - | - | |
| Lal16g0798 | 448 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 296 | 352 | IPR000504 | GO:0003723 | |
| Lal16g0798 | 448 | SUPERFAMILY | NTF2-like | 11 | 130 | IPR032710 | - | |
| Lal16g0798 | 448 | MobiDBLite | consensus disorder prediction | 209 | 232 | - | - | |
| Lal16g0798 | 448 | Gene3D | - | 3 | 136 | - | - | |
| Lal16g0798 | 448 | Gene3D | - | 283 | 423 | IPR012677 | - | |
| Lal16g0798 | 448 | ProSiteProfiles | Nuclear transport factor 2 domain profile. | 13 | 129 | IPR018222 | - | |
| Lal16g0798 | 448 | SUPERFAMILY | RNA-binding domain, RBD | 289 | 400 | IPR035979 | GO:0003676 | |
| Lal16g0798 | 448 | PANTHER | BNAA02G14660D PROTEIN | 7 | 406 | - | - | |
| Lal16g0798 | 448 | MobiDBLite | consensus disorder prediction | 369 | 383 | - | - | |
| Lal16g0798 | 448 | PANTHER | RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN | 7 | 406 | IPR039539 | - | |
| Lal16g0798 | 448 | Pfam | Nuclear transport factor 2 (NTF2) domain | 13 | 129 | IPR002075 | - | |
| Lal16g0798 | 448 | MobiDBLite | consensus disorder prediction | 369 | 448 | - | - | |
| Lal16g0798 | 448 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 294 | 377 | IPR000504 | GO:0003723 | |
| Lal16g0798 | 448 | MobiDBLite | consensus disorder prediction | 209 | 223 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal16g0798 | Lal-Chr16 | 5175449 | 5180006 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lal16g0798 | K24983 | - | gmx:100805610 | 562.377 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lal16g0798 | 16 | 5175449 | 5180006 | Lal16g0798 | 16 | 5175449 | 5180006 | ECH | |
| Lal16g0798 | 16 | 5175449 | 5180006 | Lal15g0772 | 15 | 5524533 | 5528893 | LSH | |
| Lal16g0798 | 16 | 5175449 | 5180006 | Lal23g0829 | 23 | 10740896 | 10745515 | LSH |