Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0791 ATGTCAGGTGGAATATTTGTTGGAGACTCATTTGATAGAAAACTCAAGCGAAAAATTGAGGAATCATCTACCATGGACAAAGATTCTGAAGAATTGTTACTCTCTCTGAGCCTTGGAAACAACAATATGGTGCATGAATCATCCAAGAGGAAGGTCGATGAGTATTTAAAACTTGACGAAAACTCCAACAATAATAAGGAAGTTATCAAATCCAACGAGGAACAATTCTCATGCAAGTTTTGCTGCAAGAAATTTCCCAACTCCCAAGCTTTGGGAGGACACCAAAACGCTCATAGGCGTGAAAGAAACCTCTCAAGGATGAACAAAGAACTTTCTATGGGTACTACTGGTGTCGATGTTCACCCATATCCTTATCCTTATCCATCCATGTCAAATTATCACCATTTTCGTGATTCACCCGTTTATCATAGGCCTCATATGCACCCTATGGCTCACATGTCTCCCATGCCATGGCGTCGTTTCGAAGTTGGTTATGACAACCAAGTTTTATATAACATACCTTTCTCGGGTCACCATTTTGGGATGACGACGTTCAATCCATGCACTACAAGTTTTGACACTCCTCATAGAGATGGCCACTTTGATTATGAACTTCACCATGTTTCTTCACTTGGAGAAGATATGGTTAACAGATCTATTACTACTCATAACCATCTTGGAGGCCTTCAAGGAAATCATTATACAAGGAACCAATAG 717 0.4003 MSGGIFVGDSFDRKLKRKIEESSTMDKDSEELLLSLSLGNNNMVHESSKRKVDEYLKLDENSNNNKEVIKSNEEQFSCKFCCKKFPNSQALGGHQNAHRRERNLSRMNKELSMGTTGVDVHPYPYPYPSMSNYHHFRDSPVYHRPHMHPMAHMSPMPWRRFEVGYDNQVLYNIPFSGHHFGMTTFNPCTTSFDTPHRDGHFDYELHHVSSLGEDMVNRSITTHNHLGGLQGNHYTRNQ 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0791 238 Gene3D Classic Zinc Finger 47 119 - -
Lal16g0791 238 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 238 - -
Lal16g0791 238 SUPERFAMILY beta-beta-alpha zinc fingers 72 103 IPR036236 -
Lal16g0791 238 PANTHER ZINC FINGER PROTEIN JAGGED 1 238 IPR045320 GO:0003700
Lal16g0791 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Lal16g0791 238 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0791 Lal-Chr16 5140753 5141469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0791 59 161 C2H2 Transcription Factor Family AT5G25160 30.631 1.08e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0791 - - lang:109350422 338.191