Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0789 ATGCTAGGTGGCCTCTACGGAGATCTTCCTCCGCCCTCTTCCGCCGAAGAAGATAAACCCATCAACGCCGCCAATGTCTGGTCAAGCAGCACCAAAATGGCCCCCGCCACTCTCCGTAAACCTGCAACCGTTTTCTCTCCTCCCCTAACCGTTTTAAGATCCCAATCCAAATCGAAAAATCCTAACCCTGCTAAAACGGTGGTTTCAACCACACCGGTGGTGTCGGTGTCCGTGCCGGACGATGTGGTGCACCAACCGGCTCTGATGGGCGTTCAATCGACGGTTATTGAGGAGTATGACCCGGCGAGGCCGAACGACTACGAGGAGTATCGGCGGGAGAAGAAGAGGAAGGCGAGGGAGGCGGAGATGATGAAGGAGTTAGAGAGAAGAAGGCAAGAAGAGGAGGAGAGAGAAAAGAGGGAGAGAGAGGAAAGAGAGAGGAGTGAAAGAGATAATAGTAATAATAAGGATGCTTCTAGGTTGAATATTTCTGGTGAGGAGGCGTGGAGGAGGCGTGCTGCGATGAGTGGTGGTGGGGCTGCAGCGGTTGGGGCAGTTCCAAGGTCGCCCTCGCCCCCAAGCAATGTGGATGGTTTTAGTATTGGAAAATCGGAGACCGGCGGGTTGGGATTAGGTGCGGGTGGGCAGATGACTGCGGCTCAGAGGATGATGGCGAAGATGGGGTGGAAGGAAGGGCAAGGGCTTGGGAAGCAGGAGCAAGGGATTACAACTCCTTTGATGGCGAAGAAAACGGATAGGCGAGCTGGAGTTATTGTGAATGCTAGTGACATTAGCAAGGCGGAGAAGAAAGTGGTGAAGAGTGCCAACTTCCATGGAGTGCCTACAAGGGTGCTACTGCTTAGGAACATGGTTGGTCCTGGTGAGGTAGATGATGAGCTAGAAGAGGAGGTAGGGTCAGAGTGTGCCAAGTATGGGACAGTGACCCGGGTTCTGATATTTGAGATAACAGAGGTAAATTTCCCTGTCGATGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGACCTGAAGAAACAACTAAAGCACTTGTCGATCTCGATGGTCGGTACTTTGGAGGTAGAGTGGTGCGTGCCTCGTTTTATGATGAGGAAAAGTTCAACAAGAATGAGTTGGCTCCAATGCCAGGAGAAATTCCTGGCTTCTCCTGA 1167 0.5184 MLGGLYGDLPPPSSAEEDKPINAANVWSSSTKMAPATLRKPATVFSPPLTVLRSQSKSKNPNPAKTVVSTTPVVSVSVPDDVVHQPALMGVQSTVIEEYDPARPNDYEEYRREKKRKAREAEMMKELERRRQEEEEREKREREERERSERDNSNNKDASRLNISGEEAWRRRAAMSGGGAAAVGAVPRSPSPPSNVDGFSIGKSETGGLGLGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDISKAEKKVVKSANFHGVPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEVNFPVDEAVRIFVQFERPEETTKALVDLDGRYFGGRVVRASFYDEEKFNKNELAPMPGEIPGFS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0789 388 ProSiteProfiles G-patch domain profile. 216 262 IPR000467 GO:0003676
Lal16g0789 388 PANTHER SPLICING FACTOR 45 SPF45 1 379 IPR040052 GO:0045292
Lal16g0789 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 369 IPR000504 GO:0003723
Lal16g0789 388 SUPERFAMILY RNA-binding domain, RBD 284 372 IPR035979 GO:0003676
Lal16g0789 388 MobiDBLite consensus disorder prediction 1 23 - -
Lal16g0789 388 PIRSF SPF45 3 384 IPR040052 GO:0045292
Lal16g0789 388 Pfam G-patch domain 219 258 IPR000467 GO:0003676
Lal16g0789 388 MobiDBLite consensus disorder prediction 101 156 - -
Lal16g0789 388 SMART rrm2_1 284 365 IPR003954 GO:0003676
Lal16g0789 388 SMART G-patch_5 214 260 IPR000467 GO:0003676
Lal16g0789 388 Coils Coil 107 151 - -
Lal16g0789 388 CDD RRM_UHM_SPF45 281 377 IPR034653 -
Lal16g0789 388 MobiDBLite consensus disorder prediction 87 166 - -
Lal16g0789 388 Gene3D - 279 377 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0789 222 257 C2H2 Transcription Factor Family AT5G26610 61.111 5.75e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0789 K12840 - zju:107418861 459.529