Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0787 ATGCCAAACACAACCTCAAAACATTGCCTCCTTCTTCTCATTCTTATGATCATATGTTTTATGTTGAATTCAGCAACAGAAGCTGAGGCACTAACATACAATGTTGTCAACTTTGGAGCCATTCCAAACAGAAAAATGGATTCCACCAAGGCATTCCTTAGTGTATGGTCTAAAGCTTGTGCCTCGCCCAACCCCACCACGATTTACGTTCCAAAAGGACAGTTCTTGCTTGCTAGTGGTATCATCTTCAAAGGGCCATGTGCCAACAAGGCTATTTCCATAGCCATTGATGGCACATTGGTGGCTCCCTCTGATTACCGCGTCATTGGAAATGCCGGTAAGTGGCTCCATTTCGAGTCTGTTAACGGCATTTCCATTCGTGGCGGGTTGCTTGATGGCCAAGGCACTGCTTTGTGGGATTGCAAGAACTCAGGGAAAAGTAATTGCCCAATAGGAGCCACGACATTGGCATTCAGCAACTCCCAAAACATTATGCTAAATGGGTTGACCTCAATGAATAGTCAAATGTTCCACATAGTGTTCAATGGATGCCAGAACGTGAAAACACAAGGCGTAAAGGTTATTGCCGATGGAAACAGCCCTAACACTGATGGCATACATGTTCAAATGTCTTCACACGTAACCATCTTATACTCTAATATTCGAACCGGTGATGATTGTATCTCAATTGGCCCTGGCACCACCAATTTATGGATCGAAAACGTTGCATGTGGACCAGGACATGGAATAAGCATTGGAAGCTTAGGATGGGATATGAACGAACCTGGGGTACAAAATGTGACAGTTAAAACAGTTACATTCACCGGTACTCAAAATGGTGTTAGAATAAAGTCTTGGGGGAGACCAAGCAATGGATTCGTAAGGGACATCCTTTTCCAAAATGCAATCATGGTTAATGTCCAAAACCCCATTGTAATAGACCAAAATTATTGCCCAGATAACAAGGGTTGTCCTGGTCAGGCCTCGGGAGTGAAGATAAGTGATGTTACATACGATGACATTCATGGAACATCTGCAACTGAGGTTGCTGTGAAATTTGATTGCAGTTCTATGTATCCATGCAGTGGAATAAGGTTGGAGGATGTAAAGCTTACTTACAAAAACCAAGTTGCTGAAGCTTCATGTAATCATGCTGGTGGAACTGCACTGGGTTCAGTTCAACCAGAGAGTTGCTTCTAG 1200 0.4333 MPNTTSKHCLLLLILMIICFMLNSATEAEALTYNVVNFGAIPNRKMDSTKAFLSVWSKACASPNPTTIYVPKGQFLLASGIIFKGPCANKAISIAIDGTLVAPSDYRVIGNAGKWLHFESVNGISIRGGLLDGQGTALWDCKNSGKSNCPIGATTLAFSNSQNIMLNGLTSMNSQMFHIVFNGCQNVKTQGVKVIADGNSPNTDGIHVQMSSHVTILYSNIRTGDDCISIGPGTTNLWIENVACGPGHGISIGSLGWDMNEPGVQNVTVKTVTFTGTQNGVRIKSWGRPSNGFVRDILFQNAIMVNVQNPIVIDQNYCPDNKGCPGQASGVKISDVTYDDIHGTSATEVAVKFDCSSMYPCSGIRLEDVKLTYKNQVAEASCNHAGGTALGSVQPESCF 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0787 399 PANTHER PUTATIVE-RELATED 12 398 - -
Lal16g0787 399 SMART pbh1 234 254 IPR006626 -
Lal16g0787 399 SMART pbh1 328 368 IPR006626 -
Lal16g0787 399 SMART pbh1 264 285 IPR006626 -
Lal16g0787 399 SMART pbh1 211 232 IPR006626 -
Lal16g0787 399 Gene3D - 18 397 IPR012334 -
Lal16g0787 399 PANTHER - 12 398 - -
Lal16g0787 399 Pfam Glycosyl hydrolases family 28 60 383 IPR000743 GO:0004650|GO:0005975
Lal16g0787 399 ProSitePatterns Polygalacturonase active site. 241 254 IPR000743 GO:0004650|GO:0005975
Lal16g0787 399 SUPERFAMILY Pectin lyase-like 18 399 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0787 Lal-Chr16 5108307 5111193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0787 30 399 Glycoside Hydrolase AT3G59850 66.038 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0787 K01184 - gmx:100806846 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0787 16 5108307 5111193 Lal15g1536 15 17446458 17451054 LSH
Lal16g0787 16 5108307 5111193 Lal23g0841 23 10809905 10811318 LSH