Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0747 ATGGCTCAGGTTCAGGTTCAGCCTCAGAATGCGATGCAGGGTGGCCCTAACGGTGCTGCCGGTGGTGGGAACCAGTTCGTGCCAACATCGCTTTACGTCGGAGATCTTGACCCGAGCGTCACCGATTCGCAGCTCTATGACCTGTTCAACCAATTGGGTCAGGTCGTGTCTGTTAGGGTTTGTAGGGACTTAACCACTGGGAGATCCCTTGGTTATGGTTATGTTAACTACAGCAATCCCCAAGATGCTGCCAGATCATTGGATGTTCTGAATTTCACTCCTCTCAATAACAAGCCCATCCGCATCATGTATTCTCACCGTGATCCCAGTGTTCGTAAAAGTGGAGCAGGAAATATTTTTATTAAGAATTTGGACAGGGCAATTGACCACAAGGCATTACATGATACATTCTCTTCATTTGGGAGCATCCTGTCTTGCAAGGTGTCTACAGATTCATCTGGTAACTCAAAAGGCTATGGCTTTGTACAATTTGACAATGCAGAATCTGCCCAGAAAGCCATTGAGAAGCTGAATGGTATGCTGCTGAATGATAAACAAGTTTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAAGGTTCAGCTGACAAGGCAAAATTCAACAATGTTTTTGTAAAGAACCTATCTGAATCAACCACTGATGATGAACTGAAGAAGGTTTTTGGTGAGTTTGGACCAATTACCAGTGCTGTTGTGATGAGGGATGAGGATGGGAAATCAAAGTGCTTTGGATTTGTGAACTTTGAGAATACTGATGATGCTGCTCGGGCTGTTGAGGCTCTTAATGGCAAAAAGTTTGATGACAAGGAGTGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGCATGAATTGAAACTTAAATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTAGATGATAGCATTGGCGATGAAAAACTTAAGGAGCTGTTCTCCCCTTTTGGTACCATTACCTCTTGCAAGGTTATGAGAGATCCCAGTGGCATAAGTCGAGGATCAGGATTTGTTGCATTCTCAACCCCTGAGGAGGCATCTAGAGCTCTCTTGGAGATGAATGGAAAAATGGTGGTAAGCAAACCTCTATATGTGACTCTGGCACAAAGGAAAGAAGATAGAAGAGCTAGACTGCAGGCTCAATTTGCCCAGATGCGCCCTGTTACAATGTCACCATCTGTTGCTCCTCGTGTGCCAATGTACCCCCCTGGTGGTCCAGGTATTGGTCAACAGATATTTTATGGTCAAGGCCCTCCTGCCATGATTCATTCGCAGCCTGGATTTGGGTATCAACAACAACTTGTGCCTGGTATGAGACCTGCTGGGGCTCCAGTCCCAAATTTCTTTATGCCAATGGTTCAGCAGGGACAACAGGGGCAGCGTCCTGGTGGAAGACGTACAGGTGGTGTCCAACAATCCCAGCAGACGGTTCCTCTTATGCCACAGCAGATGCTTCCTCGGGGACGTATGTATCGCTATCCTCCTCCTGGTAGGGGCATTCCCGAAGTTCCAATGCCTGGAGTTGCTGGAGGCGTGTTTTCTGTTCCATATGATGTGGGTGGGATCTCTATGCGTGATGCAGGACTCTCCCAGCAAATTCCTATTGGAGCTTTAGCTTCTGCTCTGGCTAATGCTTCTCCCGAGCAGCAGAGGACGATGCTGGGTGAGAATCTCTATCCTCTTGTGGAGCAGTTGGAAGCTGATAATGCTGCCAAGGTGACTGGCATGCTTCTGGAGATGGACCAGACTGAAGTCTTGCACTTGCTCGAGTCACCGGATGCCCTGAAAGCAAAGGTGGCTGAGGCGATGAACGTCCTCAGGAATGTCGCACAGCAGCAACAGGCTGGCAGTGCGGCTGATCAGTTGTCTTCATTATCACTCACTGACAACCTTGTTTCTTGA 1956 0.4719 MAQVQVQPQNAMQGGPNGAAGGGNQFVPTSLYVGDLDPSVTDSQLYDLFNQLGQVVSVRVCRDLTTGRSLGYGYVNYSNPQDAARSLDVLNFTPLNNKPIRIMYSHRDPSVRKSGAGNIFIKNLDRAIDHKALHDTFSSFGSILSCKVSTDSSGNSKGYGFVQFDNAESAQKAIEKLNGMLLNDKQVYVGPFLRKQEREGSADKAKFNNVFVKNLSESTTDDELKKVFGEFGPITSAVVMRDEDGKSKCFGFVNFENTDDAARAVEALNGKKFDDKEWYVGKAQKKSEREHELKLKFEQSMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVTMSPSVAPRVPMYPPGGPGIGQQIFYGQGPPAMIHSQPGFGYQQQLVPGMRPAGAPVPNFFMPMVQQGQQGQRPGGRRTGGVQQSQQTVPLMPQQMLPRGRMYRYPPPGRGIPEVPMPGVAGGVFSVPYDVGGISMRDAGLSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEADNAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMNVLRNVAQQQQAGSAADQLSSLSLTDNLVS 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0747 651 SUPERFAMILY PABC (PABP) domain 493 644 IPR036053 GO:0003723
Lal16g0747 651 Gene3D - 548 631 - -
Lal16g0747 651 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723
Lal16g0747 651 CDD RRM4_I_PABPs 310 388 - -
Lal16g0747 651 SMART poly_2 564 627 IPR002004 GO:0003723
Lal16g0747 651 CDD RRM2_I_PABPs 115 191 IPR045305 -
Lal16g0747 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Lal16g0747 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Lal16g0747 651 Gene3D - 1 116 IPR012677 -
Lal16g0747 651 Gene3D - 193 292 IPR012677 -
Lal16g0747 651 CDD RRM1_I_PABPs 30 109 - -
Lal16g0747 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Lal16g0747 651 PANTHER RNA BINDING PROTEIN 18 634 - -
Lal16g0747 651 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Lal16g0747 651 PANTHER POLYADENYLATE-BINDING PROTEIN 18 634 - -
Lal16g0747 651 MobiDBLite consensus disorder prediction 1 20 - -
Lal16g0747 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Lal16g0747 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Lal16g0747 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Lal16g0747 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Lal16g0747 651 Gene3D - 293 397 IPR012677 -
Lal16g0747 651 SMART rrm2_1 209 281 IPR003954 GO:0003676
Lal16g0747 651 SMART rrm2_1 118 190 IPR003954 GO:0003676
Lal16g0747 651 SMART rrm2_1 30 103 IPR003954 GO:0003676
Lal16g0747 651 SMART rrm2_1 312 384 IPR003954 GO:0003676
Lal16g0747 651 CDD RRM3_I_PABPs 207 286 - -
Lal16g0747 651 MobiDBLite consensus disorder prediction 473 492 - -
Lal16g0747 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Lal16g0747 651 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Lal16g0747 651 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Lal16g0747 651 SMART rrm1_1 30 103 IPR000504 GO:0003723
Lal16g0747 651 SMART rrm1_1 118 190 IPR000504 GO:0003723
Lal16g0747 651 SMART rrm1_1 312 384 IPR000504 GO:0003723
Lal16g0747 651 SMART rrm1_1 209 281 IPR000504 GO:0003723
Lal16g0747 651 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Lal16g0747 651 Gene3D - 117 190 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0747 Lal-Chr16 4834116 4839529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0747 29 650 Eukaryotic Initiation Factors Gene Family AT1G49760 74.209 0.0 903
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0747 K13126 - gmx:100813735 1106.66