Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0743 ATGCCTATCAGTTTGGAACCGTTGGAGTTAGCGGTTCAAGTTCCATACCACTTTAGGTGCCCAATCTCATTAGAGCTCATGCGCGACCCGGTTACTGTCTCTACCGGTCAGACCTACGACCGTCCTAGTATCGAGTCATGGGTTGCCACCGGCAATAGCACGTGCCCTGTTACCCGAACCCCTCTCACCGATTTCACCTTTATCCCTAACCACACCCTTCGCCGATTAATCCAAGATTGGTGTGTCTCCAACCGTGCTTTCGGGGTTGAACGAATCCCTACACCCAAACAGCCCGCTGAACCTTCCTTAATCCGTTCCCTTTTAAACCAATCTTCTTCAAACTCAACACCTTTTAATACTCGCATCTCTGCACTTAGAAAACTTCGTAGTTTTGTGCGAGATTCGGAAAGGAATCGTTCTCTTATTGCCTCACACAACGTTTGCTTTGTTCTGTTAAATATAGTTTTCGATTTCAGCCATTCTACGAGATTCGGTTCTGACGAGTTAAACCATGAGGCACTTGCGTTGCTAGTGTTTTTTCCGTTGTCTGAGGTGGAATGTAATTCTGTGGCATATGATTCTGATAAGATTAGTTATTTGTTGAGGTTGTTATTCCATTCTTCTTTTGATGTTCGAGTTAACTCAGCCGCGATGATTGAGATGGTTGTGGCTGGGACTCGTTCATCCGAGTTGAGGGCTCAGATAAGTAATGTTGATGAAATCTATGATGGTGTCATTGATATTTTGAAGAACCCGATTGCGTTTCCTCGTGCTCTCAAGATCGGGATTAAGGCGTTGTTTGCATTGTGTTTGGTCAAAGAGACGCGCCACAAGGCGGTGGCGGCGGGAGCGCCGGCGGTGCTTGTGGATCGGCTGGCGGATTTCGAGAAGTGTGATGCGGAGAGGGCGTTGGCGACGGTGGAGCTTCTGTCCCGGATTCCGGCAGGGGTCGCTGCGTTTGCAGAGCACGCGCTGACGGTGCCGCTGTTAGTAAAGATAATACTGAAGATTTCCGATCGGGCGACGGAGTACGCTACCGGGGCGCTGCTGGCGCTGTGCTCGGAAAGCGAGCTGTGCCAGAGTGACGCGGTGGCTGCGGGCGTGTTGACTCAGCTGCTGCTTTTGGTTCAGAGTGATTGCACGGTGAGAGCGAAGAGGAAGGCGCAATTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCTCAAGATTCTACCGGCAATTCTGACGACTTTGCATGCAGCATTGTGCCGTTTTGA 1254 0.5016 MPISLEPLELAVQVPYHFRCPISLELMRDPVTVSTGQTYDRPSIESWVATGNSTCPVTRTPLTDFTFIPNHTLRRLIQDWCVSNRAFGVERIPTPKQPAEPSLIRSLLNQSSSNSTPFNTRISALRKLRSFVRDSERNRSLIASHNVCFVLLNIVFDFSHSTRFGSDELNHEALALLVFFPLSEVECNSVAYDSDKISYLLRLLFHSSFDVRVNSAAMIEMVVAGTRSSELRAQISNVDEIYDGVIDILKNPIAFPRALKIGIKALFALCLVKETRHKAVAAGAPAVLVDRLADFEKCDAERALATVELLSRIPAGVAAFAEHALTVPLLVKIILKISDRATEYATGALLALCSESELCQSDAVAAGVLTQLLLLVQSDCTVRAKRKAQLLLKLLRDSWPQDSTGNSDDFACSIVPF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0743 417 SUPERFAMILY ARM repeat 103 395 IPR016024 -
Lal16g0743 417 CDD RING-Ubox_PUB 18 59 IPR045210 -
Lal16g0743 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 89 IPR013083 -
Lal16g0743 417 Gene3D - 90 409 IPR011989 -
Lal16g0743 417 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Lal16g0743 417 PANTHER WDSAM1 PROTEIN 4 415 IPR045185 GO:0061630
Lal16g0743 417 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Lal16g0743 417 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Lal16g0743 417 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 415 - -
Lal16g0743 417 SUPERFAMILY RING/U-box 11 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0743 Lal-Chr16 4813817 4815070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0743 1 417 U-box Gene Family AT1G49780 63.744 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0743 - - lang:109349449 772.696