Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0740 ATGGCTAGCCCAAGTAAATCTGCATCAATATTGTCTTTGCCGTCCTTGGAACAGAAAGGAAAAAATATTACTGAATCAAGTGCAAACATGCTTCAATATCCTCTAAACCAACAAATCCTTGTTTCCTTGGAATTGGATGGCCCGGTAGCTATCCTTTGGGATATTGAAAATTGCCCTGTCCCAAGTGATGTCCGCCCTGAAGATGTAGCAGGTAATATAAGGATGGCTTTGCGAGTGCACCCAGTAATTAAAGGAGCTGTAATGCTGTTTTCTGCGTATGGTGATTTTAATGCTTTCCCTAGGCGACTTAGAGAAGGCTGTCAGAGGACTGGTGTTAAACTCGTCGATGTTCCGAATGGGAGAAAAGATGCTGCCGACAAAGCTATACTGGTTGATATGTTCTTATTTGCTCTTGACAACCCTCCGCCGTCCTCTATCATGCTAATATCTGGAGACGTTGACTTTGCTCCAGCACTTCACATTCTCGGTCAGCGGGGATATACTGTAATTCTGGTCATCCCTTCTGGGGTGGGTGTTTCATCTGCCCTATGCAACGCTGGTAAATTTGTTTGGGACTGGCCTAGCGTCGCTCGTGGAGAAGGCTTTGTTCCTCCCTCAAAGGCATTAGTACCACCTCGTGGAAGTTCAATTGAGCTTGCTGGATATCTAATGGGGCGCCATATCAATGACAACTCTGATGGACAAAATGAAGAAGAAGCAATAGTTTATAGAGGGATGTCACAGAACTATTATAATTCGAGGGATTTCTCAATGGCGTCACAGTCTTCGGCCGAATACAACTGTGGCACATCGAACATGTCTTGCTTTCCAGCAACTGTGAGATCGCACAGCCATCCATCTGGGTCGAATGATGTTTCAGGAGGACCTATGCCTTCTAATGTCCATAATGATGGTCTGTTATGGGTACAGCCTGGGGATTTAAATGGTCTCCAAAGCCAGTTAGTAAGGTTGCTTGAACTTTCTGGAGGGCGCATGCCTCTGGCCCGTGTTCCTGCAGAGTACCAGAAAATGTATGGGAAACCTCTATACATATCTGATTATGGAGCAATGAAGTTGGTCAATCTTTTCAAGAAGATGGGTGATACACTAGCTGTTGATGGGAAAGGGCAGCGTAAATTTGTGTATCTCAGAAACTGGAAGGCATGCCGAAGTGCACCCCCTTTGTTGCTGGCAAGGAAAGACAAGAAAGGAAAGGGGGTCCAGGAAGAGAGCGCAAATGGTTTCAATGGTGGTTGCTCTTCAGATGAGTTGTCGGACGAAGAAAGAGCAATCATAGGTGAACATGATGAAAGACGTTATATAGGAAAGGGTAATCAAGGGAGAGCCGCCAGAAGTGAAATTGGTGACTGCATTCTTGAGGAATTCAAGTACGAGTTGCAGGAGATTCTAGTCAGCTATTCTTGTCAAATATTCATAGGTTGTTTCGAGGCTATATACCAGCAACGGTACAAGAAACAACTGGAATATCAGAGATTTGGCGTGGACAAGTTGGAGGATTTGTTTGAGATTGTGAGTGATGTGGTAGTATTACATGAGGAACCAGTTAGCAAGAGGATGTTCCTGACTGCTGTGGGTGGTTAA 1602 0.4488 MASPSKSASILSLPSLEQKGKNITESSANMLQYPLNQQILVSLELDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIKGAVMLFSAYGDFNAFPRRLREGCQRTGVKLVDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPSGVGVSSALCNAGKFVWDWPSVARGEGFVPPSKALVPPRGSSIELAGYLMGRHINDNSDGQNEEEAIVYRGMSQNYYNSRDFSMASQSSAEYNCGTSNMSCFPATVRSHSHPSGSNDVSGGPMPSNVHNDGLLWVQPGDLNGLQSQLVRLLELSGGRMPLARVPAEYQKMYGKPLYISDYGAMKLVNLFKKMGDTLAVDGKGQRKFVYLRNWKACRSAPPLLLARKDKKGKGVQEESANGFNGGCSSDELSDEERAIIGEHDERRYIGKGNQGRAARSEIGDCILEEFKYELQEILVSYSCQIFIGCFEAIYQQRYKKQLEYQRFGVDKLEDLFEIVSDVVVLHEEPVSKRMFLTAVGG 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0740 533 Gene3D - 313 382 IPR041966 -
Lal16g0740 533 Gene3D - 455 531 IPR041966 -
Lal16g0740 533 ProSiteProfiles OST-type HTH domain profile. 458 532 IPR025605 -
Lal16g0740 533 ProSiteProfiles OST-type HTH domain profile. 313 385 IPR025605 -
Lal16g0740 533 CDD LOTUS 314 383 - -
Lal16g0740 533 Pfam OST-HTH/LOTUS domain 315 380 IPR025605 -
Lal16g0740 533 Pfam OST-HTH/LOTUS domain 459 521 IPR025605 -
Lal16g0740 533 Gene3D - 46 194 - -
Lal16g0740 533 PANTHER LIMKAIN B LKAP 19 527 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lal16g0740 533 CDD LOTUS 459 521 - -
Lal16g0740 533 CDD PIN_limkain_b1_N_like 48 174 - -
Lal16g0740 533 Pfam NYN domain 48 187 IPR021139 GO:0004540
Lal16g0740 533 PANTHER ZINC FINGER, CCHC-TYPE, MEIOSIS ARREST FEMALE PROTEIN 1, PIN DOMAIN-LIKE PROTEIN-RELATED 19 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0740 Lal-Chr16 4794899 4796500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0740 45 199 C2H2 Transcription Factor Family AT5G61190 41.935 4.79e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0740 - - gmx:100818186 875.159