Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0734 ATGTCTTATTCCTCAACCCGCCTCACCTCCGAGCAAGAACTCTCCGTCATCGTCGCCGCCCTCACCAACGTTGTTACCGGTTGCACCACCTCCAATTTCATAACTCAAATCTTATCATCAGCTACCGAAGGAACCACCTTTGATAATCCAATAGTTCCAACACCAAACATGGGAACTTGCCGCGAATGCAACATTTCTGGGTGCTTAGGCTGCAACTACTTCAAAGAAGAGAAGAAACAGAAGAAGCTTGCGCTAAAGAAGTATAGGGGAGTGAGGCAGAGACCATGGGGAAAATGGGCAGCTGAGATTCGAGACCCTAGACGCGCCACAAGAGTGTGGCTTGGGACGTTCAAAACAGCTGAGGATGCAGCCAGAGCTTATGATAAAGCTGCCATTGAGTTTCGCGGGGCACGAGCAAAGCTCAACTTTCCATTGATAGATGAGTCATTAAGAATGCAAAGAACAGAGGAAGTAACAAAGGATGTGAATATGAATAAGGTAATGGAAGTGGAAACAATGTTTGGGAATAAAGAAAGTGAATTTTGGGATGGGATTGGGAAAGCTGAGCTTATGACAATAATGGATTTTTATGGAGATTCCACCCAAGGCTTCTAA 615 0.4537 MSYSSTRLTSEQELSVIVAALTNVVTGCTTSNFITQILSSATEGTTFDNPIVPTPNMGTCRECNISGCLGCNYFKEEKKQKKLALKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFKTAEDAARAYDKAAIEFRGARAKLNFPLIDESLRMQRTEEVTKDVNMNKVMEVETMFGNKESEFWDGIGKAELMTIMDFYGDSTQGF 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0734 204 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Lal16g0734 204 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Lal16g0734 204 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 200 - -
Lal16g0734 204 SUPERFAMILY DNA-binding domain 87 145 IPR016177 GO:0003677
Lal16g0734 204 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 2 200 - -
Lal16g0734 204 SMART rav1_2 87 150 IPR001471 GO:0003700|GO:0006355
Lal16g0734 204 Gene3D AP2/ERF domain 86 146 IPR036955 GO:0003700|GO:0006355
Lal16g0734 204 CDD AP2 88 144 IPR001471 GO:0003700|GO:0006355
Lal16g0734 204 Pfam AP2 domain 87 136 IPR001471 GO:0003700|GO:0006355
Lal16g0734 204 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Lal16g0734 204 ProSiteProfiles AP2/ERF domain profile. 87 144 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0734 Lal-Chr16 4741902 4742516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0734 3 147 AP2-EREBP Transcription Factor Family AT4G34410 44.324 2.07e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal16g0734 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0734 - - gmx:100820426 231.106