Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0733 ATGTCTTACTCTTCAACTCGTCTCACTTCGGAACAAGAACTTTCCGTCATCGTCGCCACGCTCACCAACGTTGTCACTGGTTCCACTTCTACTTCCCTTCCCACTACCTCAAACTCTATCCCTCAATTTTTCTCACACTCAACCCCACAACCCACCGGAGGAACCATCTTTGATCAACGGATAGTTCCCACCGTGAACTTGGAAACATGCAGTGAATGCAACATTGCGGGGTGCTTAGGCTGCAACTTCTTCCCCGAAGAGAAGAAGAAGAAGCAGAATTACACGAAGAAGAAGTACAGGGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCTGCTGAGATTCGTGATCCCAGACGCGCAGCGCGTGTGTGGCTAGGGACATTCAACACGGCTGAGGATGCTGCCAGGGCTTATGACAAAGCTGCCATTGAGTTCCGAGGGCCGCGAGCAAAGCTCAATTTTCCGTTGATCGATGATTCGTTAAAAGCACAGGGTGAGAAAGAAAGTGAGAATGTGATGGCTGCAGCAGATGAAGTAGTAGTAGTAGTAGTAAAGGATGAGAATTTGAATAAGGGAAAAGATATGGAAACGTTTGGGAATAAGGAGAGTGAGTTTTGGGATAGAGTTGGAGAAGCTGATTTTCAGCAGCTTATGATGATGATGGATTTTGCTGGAGATTCTTCCCACTCTGCTACGGGGAGCACTTTTAGTCCATCAGTGATATGA 726 0.4766 MSYSSTRLTSEQELSVIVATLTNVVTGSTSTSLPTTSNSIPQFFSHSTPQPTGGTIFDQRIVPTVNLETCSECNIAGCLGCNFFPEEKKKKQNYTKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEDAARAYDKAAIEFRGPRAKLNFPLIDDSLKAQGEKESENVMAAADEVVVVVVKDENLNKGKDMETFGNKESEFWDRVGEADFQQLMMMMDFAGDSSHSATGSTFSPSVI 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0733 241 ProSiteProfiles AP2/ERF domain profile. 98 155 IPR001471 GO:0003700|GO:0006355
Lal16g0733 241 SMART rav1_2 98 161 IPR001471 GO:0003700|GO:0006355
Lal16g0733 241 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 232 - -
Lal16g0733 241 CDD AP2 99 155 IPR001471 GO:0003700|GO:0006355
Lal16g0733 241 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Lal16g0733 241 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Lal16g0733 241 Gene3D AP2/ERF domain 97 157 IPR036955 GO:0003700|GO:0006355
Lal16g0733 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 2 232 - -
Lal16g0733 241 SUPERFAMILY DNA-binding domain 98 156 IPR016177 GO:0003677
Lal16g0733 241 Pfam AP2 domain 98 147 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0733 Lal-Chr16 4738259 4738984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0733 3 158 AP2-EREBP Transcription Factor Family AT4G34410 45.026 8.14e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal16g0733 AP2 3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0733 - - gmx:100820426 271.937