Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0726 ATGGCTCAACAAACCACAAACGGTTCGGATCTGAATCAGCAGAATCAACAGCAACAATGGATTCAACAGCAACAGTTGCAGCCGCATCAGTATCAGCAACAATGGATGGCCATGCAATATCCAGCTACAGCCATGGCCATGATGCAGCAACAGATGATGATGTATCCTCAACATTACATGCCTTATCTTCATCACCAACAACAACAACATCATCATTACCAGCAGCCGCCACATCAGCAGCAGCATCACATCAAGCATCACACGCCGCCACCACAGCAGAACAAGCAACAACTCTCTGCTGATGAGATCAAGACGATCTGGCTCGGTGACCTTCACCATTGGATGGATGAGAACTACCTCCATAACTGCTTTGCTCACACCGGAGAGGTTGTATCGGCCAAGGTCATACGGAATAAGCTCACCGGTCAGTCGGAGGGATATGGATTTGTGGAGTTTCATTCGCGAGCAACAGCTGAGAAAGTCTTGCAGAACTATAGTGGTGCTACGATGCCAAATACTGATCAATCATTTCGTTTGAATTGGGCTTCATTCAGTGTGGGTGAAAGGAGATCTTCTGATGCTATCTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATAGAGGTTACCGATGCTATGCTGCAGGAGACTTTTGCTTCAAGATATTCCTCTATTAAGGGAGCAAAAGTTGTCATTGATGCTAATACTGGCCGTTCTAAAGGTTATGGCTTTGTAAGGTTTGGTGATGAAAATGAGAAGACAAAGGCAATGACTGAAATGAATGGTGTTTATTGTTCAAGCAGGCCTATGAGAGTAGGTGTTGCCACACCCAAGAAAACTTATGGCTATCAGCAACATTATTCTTCCCAGACACAGGCTGTGGTGTTGGCTGGTGGACACCCTTCTAATGGTGCTGTGACTCAAGGTTCCCAGTCTGAAGGGGATTTTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGATATCAGTGATGAGGATCTCAGACACCCATTTTTGCAGTTTGGCGAGGTTGTCTCTGTGAAGATTCCTGTGGGTAAAGGTTGTGGTTTTGTTCAATTTGCTGAAAGAAAGAATGCTGAGGAAGCAATTCAGGCACTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAAGAAACATTGGAGAGGTGATTCCAATGGAAGCCATTATGGTGGTGGTCAGGGTTATGGAGGCAATGGATATGTTGTGAGACAGAATCAGGACATAGCTAAGAATTCTGCTGCTACACCTGAAGGATCCTCCTAA 1314 0.4551 MAQQTTNGSDLNQQNQQQQWIQQQQLQPHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYLHHQQQQHHHYQQPPHQQQHHIKHHTPPPQQNKQQLSADEIKTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKLTGQSEGYGFVEFHSRATAEKVLQNYSGATMPNTDQSFRLNWASFSVGERRSSDAISDLSIFVGDLAIEVTDAMLQETFASRYSSIKGAKVVIDANTGRSKGYGFVRFGDENEKTKAMTEMNGVYCSSRPMRVGVATPKKTYGYQQHYSSQTQAVVLAGGHPSNGAVTQGSQSEGDFNNTTIFVGGLDSDISDEDLRHPFLQFGEVVSVKIPVGKGCGFVQFAERKNAEEAIQALNGTVIGKQTVRLSWGRSPGKKHWRGDSNGSHYGGGQGYGGNGYVVRQNQDIAKNSAATPEGSS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0726 437 MobiDBLite consensus disorder prediction 1 20 - -
Lal16g0726 437 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 22 436 - -
Lal16g0726 437 MobiDBLite consensus disorder prediction 65 97 - -
Lal16g0726 437 CDD RRM3_NGR1_NAM8_like 318 389 - -
Lal16g0726 437 Gene3D - 302 423 IPR012677 -
Lal16g0726 437 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 22 436 - -
Lal16g0726 437 CDD RRM1_SECp43_like 105 185 - -
Lal16g0726 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 184 IPR000504 GO:0003723
Lal16g0726 437 SUPERFAMILY RNA-binding domain, RBD 309 416 IPR035979 GO:0003676
Lal16g0726 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 391 IPR000504 GO:0003723
Lal16g0726 437 SUPERFAMILY RNA-binding domain, RBD 195 294 IPR035979 GO:0003676
Lal16g0726 437 CDD RRM2_SECp43_like 197 276 - -
Lal16g0726 437 MobiDBLite consensus disorder prediction 390 413 - -
Lal16g0726 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 384 IPR000504 GO:0003723
Lal16g0726 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 269 IPR000504 GO:0003723
Lal16g0726 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 173 IPR000504 GO:0003723
Lal16g0726 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 277 IPR000504 GO:0003723
Lal16g0726 437 SUPERFAMILY RNA-binding domain, RBD 67 184 IPR035979 GO:0003676
Lal16g0726 437 SMART rrm1_1 105 180 IPR000504 GO:0003723
Lal16g0726 437 SMART rrm1_1 199 273 IPR000504 GO:0003723
Lal16g0726 437 SMART rrm1_1 320 387 IPR000504 GO:0003723
Lal16g0726 437 Gene3D - 59 189 IPR012677 -
Lal16g0726 437 Gene3D - 190 290 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0726 Lal-Chr16 4689960 4695031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0726 103 388 Eukaryotic Initiation Factors Gene Family AT2G23350 28.716 3.95e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0726 - - gmx:100798089 581.252