Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0724 ATGGGGGTTTGCACTTCAAAGCCACAGAAACCAAACCCATATGCACTTCGTGAACCAGAAGCTGAAAATGACTCTTATGACCCTCCACAAATCCCCAAAACCCCAGCCACTCCCAACAATCACCGCCGGAAAGATGACGTCATCGCCGGAAAGAAGTCCCCTTTCTTCACCTTCTACAGTCCAAGCCCCGCTCGCTTCTTCAAGAACTCTCCGGCGCCTTCGGCGGGAGGGAGCAAGAGTGCGAGCTCCACTCCGAGAAGGTTTTTTCGGCGGCCGTTTCCTCCACCGTCTCCGGCCAAGCACATAAAAGCTGTGCTGGCGAGGCGACAGGGCAAGAAGGCCGCTACGGCGATACCGGAGGAGGGTGAGGAGGATGCCGGAGATTTGGATAAGAGGTTTGGGTTTTCAAAAGAGTTCAGTAGTAGGTTGGAGATTGGGGAAGAAGTTGGGAAAGGGCATTTTGGGTATACTTATTCTGCTAGGTTCAAAAAGGGTGAGCTTAAGGGGCAGCAAGTTGCTGTCAAGGTTATCCCAAAAGCTAAGATGACAACAGCAATTGCAATTGAAGATGTGAGAAGGGAGGTGAAAATATTGCGAGCTTTGATTGGACACAACAATCTGGTACAATTTTATGATGCATTCGAAGACCAAGATAATGTCTACATTGTAATGGAGTTATGTGAAGGGGGGGAGCTTTTAGATAGGATACTATCAAGAGGAGGGAAATACTCAGAAGATGATGCAAAGGTTGTCATGGTACAGATACTAAATGTTGTTGCGTTTTGCCATCTTCAGGGTGTAGTACACCGAGATCTTAAGCCAGAGAATTTTTTGTATGCTTCAAAGGATGAAAGTTCTGAGTTAAAAGCTATAGACTTTGGGTTGTCAGATTTTGTCAGACCAGATGAAAGGCTTAATGACATTGTTGGAAGTGCATACTATGTGGCCCCTGAAGTTCTCCATAGATCTTACACCACAGAGGCTGATGTGTGGAGTATAGGTGTGATAGCATATATACTTTTATGTGGTAGTCGCCCATTTTGGGCACGAACAGAGTCAGGTATATTTAGGGCAGTTCTGAAAGCTGATCCAAGCTTCGATGAACCTCCCTGGCCTACCTTATCTAGAGAAGCAAAAGATTTTGTCAAACGCCTATTGAATAAGGACCCACGGAAGCGAATATCTGCTGCACAAGCGCTAAGTCACCCTTGGATACGAAACTACAATAATGTAAAAGTTCCACTTGATATTTTAATATTTAAGCTCATGAAGGTTTATATGCGATCATCATCCTTGCGTAAGGCTGCCTTAAGGGCCTTGTCGAAGACATTGACTGCTGATGAACTCTATTATTTGAGGCAGCAATTTGCGTTGTTGGAACCAAGCAAAAATGGCAGCATATCCCTAGAAAACATTAACAAGGCCTTGATGAAGTATGCAACAGATGCCATGAAAGAGTCTCGCATCGCTGATTTTCTTTCCTCGCTGAATGCATTGCAATATAGAAGAATGGATTTTGAAGAATTTTGTGCTGCTGCATTAAGTGTACATCAGCTTGAAGCTCTTGATCGTTGGGAGCAACATGCCCGCTGTGCATATGAACTTTTTGAGAAAGATGGCAACAGGGCTATTATGATTGAAGAACTTGCTTCAGAACTTGGACTTGGTCCTTCTATACCTGTTCATGTTGTTCTTCATGACTGGATCCGACACACTGATGGGAAGCTAAGCTTTCTTGGCTTTGTCAAATTATTACATGGTGTATCTAGCCGAAGTCTCGCAAAGTGTGCTGCAATTGATAATTGTTCCCTTGATTTGAAGAGCTCTTTCAAGCAGAGCCCATTACAGTAA 1851 0.4435 MGVCTSKPQKPNPYALREPEAENDSYDPPQIPKTPATPNNHRRKDDVIAGKKSPFFTFYSPSPARFFKNSPAPSAGGSKSASSTPRRFFRRPFPPPSPAKHIKAVLARRQGKKAATAIPEEGEEDAGDLDKRFGFSKEFSSRLEIGEEVGKGHFGYTYSARFKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALIGHNNLVQFYDAFEDQDNVYIVMELCEGGELLDRILSRGGKYSEDDAKVVMVQILNVVAFCHLQGVVHRDLKPENFLYASKDESSELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYTTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEPPWPTLSREAKDFVKRLLNKDPRKRISAAQALSHPWIRNYNNVKVPLDILIFKLMKVYMRSSSLRKAALRALSKTLTADELYYLRQQFALLEPSKNGSISLENINKALMKYATDAMKESRIADFLSSLNALQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIMIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLAKCAAIDNCSLDLKSSFKQSPLQ 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0724 616 Gene3D Phosphorylase Kinase; domain 1 145 232 - -
Lal16g0724 616 CDD STKc_CAMK 144 404 - -
Lal16g0724 616 Gene3D Transferase(Phosphotransferase) domain 1 233 422 - -
Lal16g0724 616 PANTHER CDPK-RELATED KINASE 2 41 591 - -
Lal16g0724 616 Gene3D - 430 584 - -
Lal16g0724 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Lal16g0724 616 Pfam Protein kinase domain 144 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0724 616 SMART serkin_6 143 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0724 616 SUPERFAMILY Protein kinase-like (PK-like) 141 445 IPR011009 -
Lal16g0724 616 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 591 - -
Lal16g0724 616 MobiDBLite consensus disorder prediction 67 95 - -
Lal16g0724 616 ProSiteProfiles Protein kinase domain profile. 143 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0724 616 ProSitePatterns Protein kinases ATP-binding region signature. 149 175 IPR017441 GO:0005524
Lal16g0724 616 SUPERFAMILY EF-hand 433 587 IPR011992 -
Lal16g0724 616 Gene3D - 423 514 - -
Lal16g0724 616 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0724 Lal-Chr16 4673891 4679295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0724 1 593 EF-hand Containing Proteins AT3G50530 72.283 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal16g0724 Pkinase 4.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0724 - K00924 gmx:100798913 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0724 16 4673891 4679295 Lal15g0689 15 4778259 4783566 LSH
Lal16g0724 16 4673891 4679295 Lal23g1348 23 14280446 14284556 LSH
Lal16g1403 16 10741340 10749474 Lal16g0724 16 4673891 4679295 PCT