Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0723 ATGGGGAGAACAAGGTGCTTTTTGGATATTAGCATAGGTGAAGAGTTAGAAGGAAGGATAGTGGTGGAGTTGTTCGATGATGTGGTACCTAAGACTGCTCAGAATTTCAGACTACTCTGCACCGGTGAGAAAGGTATTGGTCCAAATACTGGGGCGCCCCTTCATTTCAAGGGATCTTGTTTTCATCGAGTTATAAAAGGCTTTATGATCCAAGGAGGTGATATATCTGCTGGAGATGGTACTGGAGGAGAATCAATATATGGAGTGAAGTTTGAAGATGAGAATTTTGAGTGGAAGCATGAAAGGAAAGGAATGTTATCAATGGCGAACTCTGGTCCTGATACAAACGGGTCTCAGTTTTTTATCACCACTACCCGAACTTCTCATCTAGATGGTAAGCATGTTGTATTTGGGAAAGTAGTTAAAGGAATGGGAGTTGTCCGTTCTATTGAGCACGTCATGACTGGAGATGATGATCGTCCCACTCTTGATGTTAAAATTGTGGACTGTGGAGAAATTCCTGAAGGAGAAGATGGTGGAATATCTAACTTCTTCAAAGATGGTGATACTTATCCCGATTGGCCAGCAGACCTTGATGAAAGCCCTAATGAACTTGACTGGTGGATGAATACTGTTGACTCCATTAAAACTTTTGGCAATGAGTATTTTAAGAAACAAGACAACAAAATGGCTCTAAGGAAGTATCGGAAGGCTTTACGCTACCTGGATATTTGTTGGGAGAAAGAAGGGATTGATGAAGAAAAAAGTTCAGCTTTGAGAAAAACAAAGTCTCAGATTTTTACAAACAGCTCTGCTTGTAAATTGAAATTAGGGGATATCAAAGGAGCATTATTGGATACAGAATTTGCAATGCGTGAAGGAGAAAATAATGCCAAAGCTTTGTTCCGGCAAGGACAGGCATACACGGCACTACATGACATTGACGCTGCAGAAGAAAGCTTTAAGAATGCACTGGCCTTGGAGCCAAATGATGCTGGAATAAAAAAGGAACTAGCAGCTGTGAGGAAGAAGATAGCTGATAGGCGTGATCTAGAGAAAAAAGCATATAGCAAGATGTTCCAAAAAAACATATAG 1095 0.4064 MGRTRCFLDISIGEELEGRIVVELFDDVVPKTAQNFRLLCTGEKGIGPNTGAPLHFKGSCFHRVIKGFMIQGGDISAGDGTGGESIYGVKFEDENFEWKHERKGMLSMANSGPDTNGSQFFITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVMTGDDDRPTLDVKIVDCGEIPEGEDGGISNFFKDGDTYPDWPADLDESPNELDWWMNTVDSIKTFGNEYFKKQDNKMALRKYRKALRYLDICWEKEGIDEEKSSALRKTKSQIFTNSSACKLKLGDIKGALLDTEFAMREGENNAKALFRQGQAYTALHDIDAAEESFKNALALEPNDAGIKKELAAVRKKIADRRDLEKKAYSKMFQKNI 364
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0723 364 Pfam Tetratricopeptide repeat 298 331 IPR001440 GO:0005515
Lal16g0723 364 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Lal16g0723 364 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Lal16g0723 364 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Lal16g0723 364 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Lal16g0723 364 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Lal16g0723 364 ProSiteProfiles TPR repeat region circular profile. 298 331 - -
Lal16g0723 364 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 1 361 - -
Lal16g0723 364 SUPERFAMILY Cyclophilin-like 3 173 IPR029000 -
Lal16g0723 364 SMART tpr_5 212 245 IPR019734 GO:0005515
Lal16g0723 364 SMART tpr_5 298 331 IPR019734 GO:0005515
Lal16g0723 364 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Lal16g0723 364 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 361 - -
Lal16g0723 364 Gene3D - 1 178 IPR029000 -
Lal16g0723 364 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Lal16g0723 364 SUPERFAMILY TPR-like 209 360 IPR011990 GO:0005515
Lal16g0723 364 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Lal16g0723 364 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Lal16g0723 364 CDD cyclophilin_ABH_like 5 171 - -
Lal16g0723 364 Gene3D Tetratricopeptide repeat domain 212 361 IPR011990 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lal16g0723 Lal-Chr16 4663703 4667715 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0723 14 170 U-box Gene Family AT5G67530 43.038 4.14e-34 130
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0723 K05864 - gmx:100804110 670.233