Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0720 ATGGGTTCGGTTCCTCCAGAACTAAGCTTAGATTTAAGACCCACTTTTATTCCCAAAACTATCACTGATTTTCTCTCCACTCTCTCCAATTCCTCTTCTAATAAACTCTCTCTTCTCAACGATTTCATTGCCCGTTTAGAAGATGAATTCAGAAAGATCGATGCTTTCAAACGCGAGCTCCCTCTTTCAATGCTCCTCTTAAACGATGCAATTTCAGTTTTGAAGGAAGAATCAGAAAAATGCATGAGTCATAAATTTCAGCCAGTGTTGGAAGAGTTTATTCCTTTGAAAAAAGAGTGTGATGATGATGAGGAGGAAAATAATAACAAGGATAAGGAATGCAGAGATAAGAAGAATTGGATGAGTTCTGTTCAGCTTTGGAACACTACTACTACTACAACAACAACTACTAATAATGTCTATGACCAAAAACATCATAAATTAGACAACAAGAAAAATGAAGATGAAAGACAATATGTGGCTGAGGACCCTTTCCAACCAAGTAGTAGTAGAAATGGAGGAGGGAGAGGGTTTTTACCTTTCTCTACATACACTTCTAATCCTGTTACAACAATGGTACTGCCACCAACCAAGGAAGAGAAGGAAGACACTGCTATGAATAGACTTTCTCTTTTGACTGCTCCTCCTCCTGCAGTGAAGAACTTGAGGGAGGGATGTAGTTCAAGTGGATCCAGAACTAATTCCAATAGGGCACTTTCCTCCTCTCCTCCTATGGCTCAGCCGAATTTACGCACCGGATCGCTTCAGCAGCAGCATTTAGCTTCTAGAAAGCAGAGGAGATGCTGGTCACCGGAGTTGCACCGTCGATTTGTCAATGCCTTGCAGAAACTTGGTGGTTCTCAAGTGGCAACACCGAAGCAAATTAGAGAACTCATGCAGGTTGATGGCCTAACCAATGATGAAGTCAAGAGCCATTTACAAAAATACCGACTTCATACTCGAAGAGTTCCTTCTACAAATACTAACCAGTCTGTTGTAGTTCTGGGAGGTTTGTGTATGTCCCAAGATCAATACAATGACTCTTCAAAGGGTAGCAGTTCAGTGTCTGGTTCTCCTCAAAGTCCCCTTCACTTAGCTACAGGGTCCCAGGCAGGGACGGATAGCATGGAAGATGACGAAGATGCAAAATCTGAGAGTCATAGCTGGAAGAGACACATTCACAACAACACTGGAAAAGTTGGTGTATAG 1209 0.4185 MGSVPPELSLDLRPTFIPKTITDFLSTLSNSSSNKLSLLNDFIARLEDEFRKIDAFKRELPLSMLLLNDAISVLKEESEKCMSHKFQPVLEEFIPLKKECDDDEEENNNKDKECRDKKNWMSSVQLWNTTTTTTTTTNNVYDQKHHKLDNKKNEDERQYVAEDPFQPSSSRNGGGRGFLPFSTYTSNPVTTMVLPPTKEEKEDTAMNRLSLLTAPPPAVKNLREGCSSSGSRTNSNRALSSSPPMAQPNLRTGSLQQQHLASRKQRRCWSPELHRRFVNALQKLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPSTNTNQSVVVLGGLCMSQDQYNDSSKGSSSVSGSPQSPLHLATGSQAGTDSMEDDEDAKSESHSWKRHIHNNTGKVGV 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0720 402 MobiDBLite consensus disorder prediction 163 183 - -
Lal16g0720 402 PANTHER TRANSCRIPTION FACTOR HHO6 7 394 - -
Lal16g0720 402 MobiDBLite consensus disorder prediction 224 264 - -
Lal16g0720 402 MobiDBLite consensus disorder prediction 217 267 - -
Lal16g0720 402 Gene3D - 263 321 - -
Lal16g0720 402 Pfam Myb-like DNA-binding domain 266 317 IPR001005 -
Lal16g0720 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 394 IPR044787 GO:0003700|GO:0006355
Lal16g0720 402 MobiDBLite consensus disorder prediction 376 392 - -
Lal16g0720 402 MobiDBLite consensus disorder prediction 344 373 - -
Lal16g0720 402 MobiDBLite consensus disorder prediction 162 183 - -
Lal16g0720 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 261 321 IPR017930 -
Lal16g0720 402 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 264 319 IPR006447 GO:0003677
Lal16g0720 402 SUPERFAMILY Homeodomain-like 262 322 IPR009057 -
Lal16g0720 402 MobiDBLite consensus disorder prediction 344 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0720 Lal-Chr16 4650657 4653724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0720 7 340 G2-like Transcription Factor Family AT2G03500 40.223 1.11e-58 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal16g0720 Myb_DNA-binding 3.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0720 - - gmx:100806237 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0720 16 4650657 4653724 Lal15g0686 15 4748482 4752311 LSH
Lal15g1067 15 9023288 9026093 Lal16g0720 16 4650657 4653724 PCT