Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0694 ATGAATTTTCATTATTCAACTAGTCCACAAGCACTTTTCTCCTTTTGTTTACTCATCCCCTTTGCTCTCATTAATGGCTACCAAGCTAAGGCCACAAATGCTGACAGCAAAGTTATATCAATTGGTGCAATCATAGATATTAACTCTCGTATTGGAAAAGAACAGCAAGTAGCAATGGACATTGCAGCTCAAAGTTACAATAACACTTCAAACTCTTACAAACTGGCTCTCTATTTTCAGGACCTGTCCAATGATCATTTCAAAGCTACTGCTCTTGCTGAAGATATGATTAAAAAGCAGAAGGTACAAGTAATTGTTGGAATGCATAAATGGGTAGAAGCAACTCAAATTGCTGAACTAGGAAGCCAAGCTCAAGTTCCTATCATATCATTTGCAGCACCTTCCATTACCCCACAAATGATGCCGATTCGTTGGCCCTATTTGGTGACACTAGCTAACAATGGTACTGCATATGTAAAATGTATTGCAGATATAGTGCGTGCTTACGGGTGGCAGCGAGTAGTGGCCATTTACGAAGATGATGGTTATGGTGGAGATTATGGAATTCTAGCACTGCTATCTGAGGCCCTCCAAGTTGATGGTTCAATTATCGAGTATCGTTTAGCTCTCCCATCATCTTCTTATATGTCTGATCCTCGAGACTTTATTCGTGAAGAGCTGCTGAAGTTAATTGAAAGTACACAATCTCGGGTGTTCATTGTTATACAATCATCATTAGATATGGTGATTCATTTGTTCAGAGAAGCTTCACAAATGGGACTTGTGGATAGAGAATCAGCTTGGATAATCCCAGAAAGCATAACTAATTCGCTAGAGTATGTCAATAAAGTTGACATTTCCTATATGGAGGGAGCATTAGGAATCAAGACATACTACCATGAAAATAACAGTGAGTATCAATATTTTGAGGCTCTGTTCCGAAGAACTTTCCGGGACAAGTATCCTGAGGAAGATAACCGAAACCCAGGATTTTATGCACTACAAGCATATGATAGCATTAAAGTTACTGCACAAGCAGTAGATAGAATGGCCAAGGGGGTTAGTAGTGCCAAAAATATTTTACTAAGTGAAATATTGTCTACCAATTACCTTGGTTTAAGTGGAGAAATTCAATTTGAAGGAATGCAGCTCTTACCGAATCCTACCTTAAGGATTGTAAATGTATATGGGACGAGTTACAGAGAATTAGATTTTTGGACTCTGGAACAAGGCTTCACCACTAGTCTTTCCACAGAACAAGGTAGTAACAATACTTATATGAACACCAAAAGTTTAAGTGGTGTAGTGATTTGGCCTGGGAAGTTGGTGCTGAGAGTTCCAAAGGGATGGAATCTGCCTACTAAACAAAATCCAATGAAAATAGCAGTCCCCGGAAGAACTACTTTTTCCAAGTTTGTAAAGGTTGATTATGGAGAGAATGGAAATCCAGTTAAATATACTGGATTCTGCATTGAGATTTTTGAAAAGGTGTTAAAACTTCTGGAGTATGATCTGCCATTTGAGTACACTCCCATCAACGGATCCTATCCTGACTTGGTTCAACTTGTCTACAATAAGACTTTTGAGGCTGTAGTTGGTGATATAACACTACTAGCGGAAAGATTGCAATATGTAGATTTTACGGTGCCATATGCAGAATCAGGATTATCAATGGTAACTACCCAAAAGTATGAAGATTCAGCATTGATGTTTCTGAAGCCCTTCTCCTGGCAGATGTGGGTGGTAACTGGTGCCATATTGACTTACACAATGTTGGTAGTTTGGTACCTGGAGCGGAAACAAAATCCAGAGTTTGATGGCAATTGGAAAAGCCAGATGGGGACTGCACTTTCGTTTACATTCTCCTCTCTATTCTTTGCGCATAGGGAGAAAATGTATAGCAACTTCACTCGTTTGGTGATGGGAGCATGGCTCTTTCTAGTTTTGATTCTTAACTCGAGCTACACAGCTAGTCTTTCTTCAATGCTCACAGTTCAAAAACTGAAGCCAAATATCACAAGCATTGAGTGGTTGAAGAAGAACAACGCGAAAATTGGTTGTGATGGAGATTCATTTGTTAGTACTTACCTAGTGAATGTGGAAAGGTTCAAGCCAGAGAACATCATAAACATTAGTAGTGAAGACATGTATCCCAGTTCATTCAAAAACAACTCAATAGCAGCTGCTTTTCTCGAACTCCCTTATGAAAAAGTATACGTCAATACATACTGCAGCCGATACTCTGGCTCTGTACCAACCACCAGGTTTGGAGGACTGGGATTTATGTTCCAAAAAGGCTCCCCAGTGGTCAAAGACGTTTCTAAAGCTATATTGCAGCTATTAGAACAGGGAGAGATTAAGATGCTGGAAGATAAATGGTTGAATCCCTCAGGCGAGTGCACCAACAACGTGATGTCCACCAATGCAGAAACTTTGAATCTTGGAAATTTATGGGTTCTATACGCGATTTCTGGAGGCATTTCTACTCTCTGTTTGATATTTGCTATCATCTATTCCATAAAAGATAAAACAGCTCAAAATCATGCACAAGGTAATGACACCGCTAATGATGAACATCCTTGGAAAAGGGCTGTAAGATTAGCTAAGAAGATATGTAGCAGAAAGCATAGTGAAGTAAAGACACAGGGTGATGTTACTGACTGTTCATCCAGGTGGGATTCTATGAGCACCACTGATACCCCGGAGCATCAGCAGACACAGTTACCAGAAGTCATAATAAACTCTTCCACATCACCAATGCAAATAACTCATGGAGATAGGTAA 2784 0.3966 MNFHYSTSPQALFSFCLLIPFALINGYQAKATNADSKVISIGAIIDINSRIGKEQQVAMDIAAQSYNNTSNSYKLALYFQDLSNDHFKATALAEDMIKKQKVQVIVGMHKWVEATQIAELGSQAQVPIISFAAPSITPQMMPIRWPYLVTLANNGTAYVKCIADIVRAYGWQRVVAIYEDDGYGGDYGILALLSEALQVDGSIIEYRLALPSSSYMSDPRDFIREELLKLIESTQSRVFIVIQSSLDMVIHLFREASQMGLVDRESAWIIPESITNSLEYVNKVDISYMEGALGIKTYYHENNSEYQYFEALFRRTFRDKYPEEDNRNPGFYALQAYDSIKVTAQAVDRMAKGVSSAKNILLSEILSTNYLGLSGEIQFEGMQLLPNPTLRIVNVYGTSYRELDFWTLEQGFTTSLSTEQGSNNTYMNTKSLSGVVIWPGKLVLRVPKGWNLPTKQNPMKIAVPGRTTFSKFVKVDYGENGNPVKYTGFCIEIFEKVLKLLEYDLPFEYTPINGSYPDLVQLVYNKTFEAVVGDITLLAERLQYVDFTVPYAESGLSMVTTQKYEDSALMFLKPFSWQMWVVTGAILTYTMLVVWYLERKQNPEFDGNWKSQMGTALSFTFSSLFFAHREKMYSNFTRLVMGAWLFLVLILNSSYTASLSSMLTVQKLKPNITSIEWLKKNNAKIGCDGDSFVSTYLVNVERFKPENIINISSEDMYPSSFKNNSIAAAFLELPYEKVYVNTYCSRYSGSVPTTRFGGLGFMFQKGSPVVKDVSKAILQLLEQGEIKMLEDKWLNPSGECTNNVMSTNAETLNLGNLWVLYAISGGISTLCLIFAIIYSIKDKTAQNHAQGNDTANDEHPWKRAVRLAKKICSRKHSEVKTQGDVTDCSSRWDSMSTTDTPEHQQTQLPEVIINSSTSPMQITHGDR 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0694 927 Pfam Ligand-gated ion channel 796 825 IPR001320 GO:0015276|GO:0016020
Lal16g0694 927 Gene3D - 33 157 - -
Lal16g0694 927 SMART GluR_14 460 796 IPR001320 GO:0015276|GO:0016020
Lal16g0694 927 CDD PBP1_GABAb_receptor_plant 40 416 IPR044440 -
Lal16g0694 927 Gene3D - 568 706 - -
Lal16g0694 927 PIRSF IGluLR_plant 8 925 IPR017103 -
Lal16g0694 927 Pfam Bacterial extracellular solute-binding proteins, family 3 485 795 IPR001638 -
Lal16g0694 927 Gene3D - 158 326 - -
Lal16g0694 927 PANTHER GLUTAMATE RECEPTOR 3.4 20 908 - -
Lal16g0694 927 SUPERFAMILY Periplasmic binding protein-like I 36 450 IPR028082 -
Lal16g0694 927 SUPERFAMILY Periplasmic binding protein-like II 442 795 - -
Lal16g0694 927 MobiDBLite consensus disorder prediction 883 927 - -
Lal16g0694 927 CDD GluR_Plant 457 794 - -
Lal16g0694 927 Gene3D - 745 802 - -
Lal16g0694 927 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 20 908 - -
Lal16g0694 927 Gene3D - 456 567 - -
Lal16g0694 927 Pfam Receptor family ligand binding region 56 395 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0694 Lal-Chr16 4468642 4472995 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0694 39 869 Ion Channels AT2G29100 33.372 2.83e-129 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0694 - - aprc:113859865 1240.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0694 16 4468642 4472995 Lal16g0694 16 4468642 4472995 ECH