Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0683 ATGGCTTCTGATAATAATGGCTATAGTGCAAGTGAGCTATTTGAAGGTCAAGTTCACTTGTACAGACACATCCAAAACCATTTAAATACTCAGTGCATCAAATGGGCCATTGAACTTGGCATACCAGATATCATCCACAACCATGCACAACCCATTACTCTTCCCCACTTGGTTTTAGCTCTTCAAGTTCCACAAGCTAAAGTTGCTTGTGTTCAGCGCCTAATGCGCTTATTGGCACACAATCACTTCTTTGTTATTACTAAAATAATAGATGCCAACACTGAAGTCAAAGATGCATATTCTCTTACTCCTTCCTCACAACTCCTTGTTAAAGGTTCTGACCACAGCTTATCATCAATGGTTCAGCTTATGACCAACCCAAATCTTTTTGATATGTTCAATCATTTGGGGAAGTGGACTTTCACGGAGGAGAATACAATTGTTGAGACTGCATTAGGGTCAGAAAGCTTTTGGGACTACATGCAACAAAATCCCACACAATTGACACTCTTCAATGAGGGAATGGAAAGTGATTCACGCCTAGTAAGGCTGGGATTAAGAGATTGTAAATTCGTTTTTGAGGGCTTGGATTCTTTGGTTGATGTTGGTGGTGGAACTGGAAACACAGCTAAGTTCATTTGTGAAGCATGTCCTAATCTAAAATACATAGTTTTTGACCTTCCACAAGTTGTTACAGGCATAACAGGAAGAAACAACTTGACTTTTGTTGGTGGCAACATGTTTGAATCTATTCCTCAAGCTGATGCAGTTTTACTCAAGTGGGTTTTACATAATTGGACTGATGATGACTGCATAAAGATACTAAAAAATTGTAAAGAAGCTATTTCAAGCAAAGACAAAGAAGGAAAAGTGATCATAATTGATACTGTGATAAATGAAAAGCAAGATGAACATGGAGTGACAGAAGTTAAACTCTTCTTTGACATAGCTATGATGGCTATTCACAATGGAAAGGAGAGAGATGAAGGAGATTGGAAAGGACTATTTAAGAGGGCAGGCTTCAAAAATTACAAGATATTTCCCATATTTGGCTTTAGATCTCTCATTGAACTTTTTCCTTAA 1083 0.3786 MASDNNGYSASELFEGQVHLYRHIQNHLNTQCIKWAIELGIPDIIHNHAQPITLPHLVLALQVPQAKVACVQRLMRLLAHNHFFVITKIIDANTEVKDAYSLTPSSQLLVKGSDHSLSSMVQLMTNPNLFDMFNHLGKWTFTEENTIVETALGSESFWDYMQQNPTQLTLFNEGMESDSRLVRLGLRDCKFVFEGLDSLVDVGGGTGNTAKFICEACPNLKYIVFDLPQVVTGITGRNNLTFVGGNMFESIPQADAVLLKWVLHNWTDDDCIKILKNCKEAISSKDKEGKVIIIDTVINEKQDEHGVTEVKLFFDIAMMAIHNGKERDEGDWKGLFKRAGFKNYKIFPIFGFRSLIELFP 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0683 360 Pfam Dimerisation domain 32 79 IPR012967 GO:0046983
Lal16g0683 360 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 357 IPR029063 -
Lal16g0683 360 PIRSF O-mtase 1 360 IPR016461 GO:0008168
Lal16g0683 360 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 2 359 - -
Lal16g0683 360 PANTHER O-METHYLTRANSFERASE 2 359 IPR016461 GO:0008168
Lal16g0683 360 Pfam O-methyltransferase domain 133 342 IPR001077 GO:0008171
Lal16g0683 360 Gene3D - 1 109 IPR036388 -
Lal16g0683 360 CDD AdoMet_MTases 199 298 - -
Lal16g0683 360 Gene3D Vaccinia Virus protein VP39 110 360 IPR029063 -
Lal16g0683 360 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 360 IPR016461 GO:0008168
Lal16g0683 360 SUPERFAMILY "Winged helix" DNA-binding domain 11 113 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0683 Lal-Chr16 4406984 4408521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0683 33 359 Monolignol Biosynthesis Gene Families AT5G54160 33.634 3.04e-48 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0683 K22588 K13262 gmx:100813225 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0683 16 4406984 4408521 Lal16g0683 16 4406984 4408521 ECH