LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal16g0678	ATGAAGTTCAATATTGCTAACCCCACCACTGGATGCCAGAAGAAGCTGGAAATTGATGATGATTTGAAGCTCCGTGCATTTTGGGATAAGAGGATCTCACAGGAGGTACTTGGTGATGCTCTAGGCGAGGAATTTAAAGGGTATGTTTTCAAGATCACTGGAGGATGTGACAAACAAGGATTCCCAATGAAGCAGGGTGTGCTGACCCCTGGGCGTGTCCGTCTCTTACTTTATAGAGGGACCCCATGTTTCCGTGGATATGGAAGGCGTAATGGAGAGCGCAGGAGAAAGTCTGTTCGTGGTTGTATTGTCAGCCCAGACCTCTCTGTTCTGAACTTGGTAATTGTGAAGAAGGGTGACAATGATTTGCCTGGCTTGACTGACATTGAGAAGCCAAGAATGAGGGGGCCCAAGAGAGCATCTAAGATCCGCAAGCTGTTCAACTTGTCCAAGGAGGATGATGTGAGGAAGTATGTTAACACATACCGCCGAACCTTTACAACCAAAAACGGTAAAAAGGTGAGCAAAGCACCTAAGATCCAAAGACTGGTGACTCCTTTGACACTCCAAAGGAAGCGAGCAAGAATTGCAGATAAGAAGAAGAGAATAGCAAAGGCAAAATCAGATGCAGCAGAGTATCAGAAGCTCCTTGCTTCCAGGTTGAAGGAACAGAGGGAACGCAGGAGTGAGAGTTTGGCAAAGAAGAGATCCAGACTTTCTAGTGCCGCCACCAAGCCTTCTGTCACAGCTTAA	753	0.4675	MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSDAAEYQKLLASRLKEQRERRSESLAKKRSRLSSAATKPSVTA	250

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal16g0678	250	Gene3D	-	133	234	-	-
	Lal16g0678	250	SMART	Ribosomal_S6e_2	1	128	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Lal16g0678	250	PANTHER	40S RIBOSOMAL PROTEIN S6	1	250	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Lal16g0678	250	PIRSF	RPS6e	1	250	IPR014401	GO:0003735\|GO:0005840\|GO:0006412
	Lal16g0678	250	MobiDBLite	consensus disorder prediction	220	250	-	-
	Lal16g0678	250	Coils	Coil	189	216	-	-
	Lal16g0678	250	MobiDBLite	consensus disorder prediction	236	250	-	-
	Lal16g0678	250	Pfam	Ribosomal protein S6e	1	128	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Lal16g0678	250	MobiDBLite	consensus disorder prediction	220	235	-	-
	Lal16g0678	250	PANTHER	40S RIBOSOMAL PROTEIN S6	1	250	-	-
	Lal16g0678	250	ProSitePatterns	Ribosomal protein S6e signature.	52	63	IPR018282	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal16g0678	Lal-Chr16	4389522	4391749	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal16g0678	1	246	Cytoplasmic Ribosomal Protein Gene Family	AT5G10360	73.171	2.43e-120	339

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal16g0678	K02991		-	gmx:100786559	436.802

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal16g0678	16	4389522	4391749	Lal15g0631	15	4352762	4355376	LSH
	Lal16g0678	16	4389522	4391749	Lal23g0941	23	11520722	11523536	LSH
	Lal16g0678	16	4389522	4391749	Lal5g1725	5	19362857	19365225	PCT
	Lal16g0678	16	4389522	4391749	Lal11g0194	11	1377466	1380371	PCT
	Lal5g1725	5	19362857	19365225	Lal16g0678	16	4389522	4391749	PCT
	Lal11g0194	11	1377466	1380371	Lal16g0678	16	4389522	4391749	PCT