Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0677 ATGGCATTGGTGTTTATATGTGTAGGAGTTTCAGGCTTTTACGGAAGGTGGGATTTGACTTTGAAGAATTGTTGGGATTTGATGGATGGAAATATGAGCAATTCTTGGATAAGGAGAGCAAAATACTCTCACACAGTATGTCACCGGACGGATTTTACCAGATCGGGGTCTCTTCCGACCAGGAATTCAGGTCTGAAATATAGGCCACCAGAAGCAGCTCTTCGTAATCTAAACCCTGTTGCTGAGGTTTCACAAGTTCAGAAAAATATCATAACAAACAATCTGAGATCTGTATCCCCTTTGCCTGAAACCTTTGTTCCTCAATCCTTTAAGGAAGCCAGACATGAACGGAAGAGGTTCTCAACACCAGGTCCACAGAGGAAAAAGCAGGATAAGAAAATTATGGGCAAGTTACTGAACAAGGATCAGCAAATTAAGGTATCAAATTCAACATTGCCTATTAAGCACCCTGCTTCAATGAAACTAGGAGACAAGTCAATGCAACGCAAGGAATCAGGATGGACAAAGTATTTTGATCATGGTGGAGGAAGGGTTACCGCTGTTGGAACAGCTGAAGAATGGACTGTTGATCTCTCTAAGCTGTTTCTGGGTGTTAGGTTTGCTTATGGGGCTCACAGTCGTCTTTACCGTGGTATGTATAAAGAGGAATCTGTTGCTGTCAAAATTATCAGGGTACCAGATGATGACGAAAACGGAACATTGGCTTCTCGATTAGAGAAACAGTTCATTAGAGAAGTCACACTTTTATCTCGCCTCCACCATCCAAATGTTATAAAGGTAATTGAATCAAATCCTTTCTCTTCTTTTGTTTCTGCTGTTTACAAACTATATTTACAGGCTGAAATTACATTCTGTCATACAATTATTCGCATTGAATACAAGTTCATAGCAGCTTGCAGAAAGCCTTCTGTTTATTGTGTTATCACAGAATATTTATCAGAAGGTTCTTTGAGAGCATACTTGCGTAAGTTGGAGAGAGAAACTGTTTCTCTACAAAAGCTAATTGTTTTTGCGCTGGATATTGCTCGTGGAATGGAATATATACACTCTCAAGGTGTCGTTCATCGAGACCTTAAACCTGAGAATGTCCTTATTAATGATGACGGTCACCTTATTATAGCTGATTTTGGCATTGCTTGTGAGGAAGCATACTGCGACTTATTAGTGGATGACCCTGGTACTTACCGTTGGATGGCACCAGAGATGATCAAGCGTAAATCCCATGGGAGGAAGGTTGACGTTTACAGTTTTGGTCTTATTTTATGGGAAATGTTGACCGGAACAACACCGTATGAGGATATGACTCCCATACAAGCCGCTTTTGCCGTAGTAAATAAGAATTCCAGGCCTGTTATTCCTTCAAATTGTCCACCTGCTATGCGATCTTTAATTGACCAATGTTGGTCCTTGCATTCAGATAAGAGGCCGGAGTTCTTGCAGATTGTTAAGGTATTAGAGCAATTTGAATCTTCACTGGCTCGTGATGGAACCCTAACTACGACGCAAAACTTTTTAAGCCAAGATAATAAAAGTGGCCCTCTTCATTGGATGCAAAAGCGTAGTTCTGTGCATCAACCCAGTGGTCCTGTGCAAAAATACAATGATTTTGTGCCTAAGCCAAAATTCTCGTGA 1653 0.4077 MALVFICVGVSGFYGRWDLTLKNCWDLMDGNMSNSWIRRAKYSHTVCHRTDFTRSGSLPTRNSGLKYRPPEAALRNLNPVAEVSQVQKNIITNNLRSVSPLPETFVPQSFKEARHERKRFSTPGPQRKKQDKKIMGKLLNKDQQIKVSNSTLPIKHPASMKLGDKSMQRKESGWTKYFDHGGGRVTAVGTAEEWTVDLSKLFLGVRFAYGAHSRLYRGMYKEESVAVKIIRVPDDDENGTLASRLEKQFIREVTLLSRLHHPNVIKVIESNPFSSFVSAVYKLYLQAEITFCHTIIRIEYKFIAACRKPSVYCVITEYLSEGSLRAYLRKLERETVSLQKLIVFALDIARGMEYIHSQGVVHRDLKPENVLINDDGHLIIADFGIACEEAYCDLLVDDPGTYRWMAPEMIKRKSHGRKVDVYSFGLILWEMLTGTTPYEDMTPIQAAFAVVNKNSRPVIPSNCPPAMRSLIDQCWSLHSDKRPEFLQIVKVLEQFESSLARDGTLTTTQNFLSQDNKSGPLHWMQKRSSVHQPSGPVQKYNDFVPKPKFS 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0677 550 ProSiteProfiles Protein kinase domain profile. 201 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0677 550 Gene3D Transferase(Phosphotransferase) domain 1 293 499 - -
Lal16g0677 550 PRINTS Tyrosine kinase catalytic domain signature 316 329 IPR001245 GO:0004672|GO:0006468
Lal16g0677 550 PRINTS Tyrosine kinase catalytic domain signature 354 372 IPR001245 GO:0004672|GO:0006468
Lal16g0677 550 PRINTS Tyrosine kinase catalytic domain signature 400 410 IPR001245 GO:0004672|GO:0006468
Lal16g0677 550 PRINTS Tyrosine kinase catalytic domain signature 419 441 IPR001245 GO:0004672|GO:0006468
Lal16g0677 550 PRINTS Tyrosine kinase catalytic domain signature 463 485 IPR001245 GO:0004672|GO:0006468
Lal16g0677 550 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 300 519 - -
Lal16g0677 550 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 32 269 - -
Lal16g0677 550 MobiDBLite consensus disorder prediction 110 132 - -
Lal16g0677 550 Pfam Protein tyrosine and serine/threonine kinase 301 492 IPR001245 GO:0004672|GO:0006468
Lal16g0677 550 MobiDBLite consensus disorder prediction 523 550 - -
Lal16g0677 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 360 372 IPR008271 GO:0004672|GO:0006468
Lal16g0677 550 CDD STKc_MAP3K-like 210 492 - -
Lal16g0677 550 SMART serkin_6 201 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0677 550 Gene3D Phosphorylase Kinase; domain 1 190 271 - -
Lal16g0677 550 PANTHER TYROSINE KINASE FAMILY PROTEIN 32 269 - -
Lal16g0677 550 PANTHER TYROSINE KINASE FAMILY PROTEIN 300 519 - -
Lal16g0677 550 SUPERFAMILY Protein kinase-like (PK-like) 192 508 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0677 Lal-Chr16 4384979 4388394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0677 33 550 MAP Kinase Kinase Kinase AT5G58950 49.460 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lal16g0677 PK_Tyr_Ser-Thr 9.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0677 - - lang:109331738 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0677 16 4384979 4388394 Lal23g0945 23 11536579 11541238 LSH
Lal16g0677 16 4384979 4388394 Lal3g0088 3 523752 527485 PCT
Lal16g0677 16 4384979 4388394 Lal11g0186 11 1301889 1305106 PCT
Lal3g0088 3 523752 527485 Lal16g0677 16 4384979 4388394 PCT
Lal11g0186 11 1301889 1305106 Lal16g0677 16 4384979 4388394 PCT