Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0670 CATACTGGTCATGAAACCATACGAAGTGGCCAAATCGCGTTGAATTCCATTCAACGTCGTTGTGTTAAAGTTTCTGCTGCTGAATCCATCCCTGTCACCAGATTCTTGCCACCTGACCACTTCAACCTGGCAATGTTAACCCTTGAATTGGACTTCATTAAAAGGGGGAACAGGAGTGAACAGATTGATGCTGTTCAACTGGCTAAACAACTTAGGAAGAGATTTATAAATCAGGTTATGACAGCAGGGCAGAAAGTGTTATTTGAGTATCACGGAAATAATTATAACTTTACAGTCAGTCAAGCTGCTGTTGAGGGACAAGAAAAGTCTAATTCTCTTGAAAGAGGGATGGTTTCAGATGACACATATATTGTTTTCGAAACAGCACGCGATAGTGGAATTAAGATTGTCAATCAGCGAGAGGCTGCCACTAGCAACATTTTTAAGCAGAAAGAGTTTAATCTTGAGTCTCTGGGCATTGGAGGCCTGAGTGCCGAGTTTGCAGATATATTTCGAAGAGCTTTTGCGTCTCGTGTTTTTCCTCCCCATGTTACATCTAAATTAGGGATCAAACATGTGAAGGGCATGCTTCTTTATGGGCCTCCTGGAACTGGAAAGACCCTTATGGCACGTCAAATTGGAAAAATTTTGAACGGGAAGGAACCAAAGATTGTAAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGGGACCTTTTTGCTGATGCTGAACAGGAGCAGAGGACCCGAGGTGATGAAAGCGATTTGCATGTTATAATCTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCGACTCGAGATGGTACTGGAGTTCATGATAGCATTGTGAACCAGCTTCTTACCAAGATCGATGGTGTGGAGTCTCTAAATAATGTTTTGCTTATTGGAATGACCAATAGAAAGGACATGCTTGATGAAGCACTCTTAAGACCAGGGCGGTTGGAGGTGCAGGTTGAGATAAGCCTTCCTGATGAAAATGGTAGATTGCAAATTCTTCAAATTCATACTAACAAGATGAAGGAGAATTCCTTTCTGGCTCCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACAAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCTGTCTCATATGCTTTAAATAGACAACTGAGTCTAGAAGATCTCACTAAGCCAGTAGAGGAAGAGAATATTAAGGTGACAATGGAAGACTTTTTGAATGCACTGCATGAAGTCGTTCCTGCATTTGGAGCTTCCACCGATGACCTTGAAAGATGCAGACTGCATGGCATGGTTGACTGTGGTGATCGACATAAGCACATTTATCAAAGAGCAATGCTACTTGCGGAGCAAGTTAAAGTGAGTAAAGGAAGCCCACTTGTTACTTGTCTTCTTGAAGGTTCTAGGGGCAGTGGTAAAACCGCACTTGCAGCAACTGTTGGTATTGACAGTGACTTCCCATATGTCAAGATAGTTTCTGCTGAAACAATGATTGGTCTGCATGAGAGCACTAAATGTGCGCAGATTATTAAGGTTTTTGAGGATGCATACAGGTCACCATTAAGTGTCATTGTTCTTGATGACATTGAGAGGTTATTGGAGTATGTGGCCATTGGTCCCCGATTTTCAAACTCGATCTCTCAGACATTACTGGTCCTGCTCAAACGGCTTCCTCCAAAGGGCAAAAAACTCATGGTTATTGGCACAACAAGTGAACTGGATTTCTTGGACTCCATTGGATTTTGTGATACTTTCTCTGTCACTTACCATGTCCCTAACTTGAACACAAATGATGCAAAGAAGGTCCTAGAACAGTTGAATGTTTTTGCTGATGAAGACATTGATACTGCTGCAGAGGTGTTGAATGATATGCCTATCAGGAAGCTATACATGTTGATTGAGATGGCAGCACAAGGGGAGCAAGGAGGATCTGCAGAAGCTATCTTTTCTGGCAAAGAGAAGATTAAGATATCTCATTTCTTTGATTGCCTCCAGGATGTTGTTAGAATTTAA 2052 0.4167 HTGHETIRSGQIALNSIQRRCVKVSAAESIPVTRFLPPDHFNLAMLTLELDFIKRGNRSEQIDAVQLAKQLRKRFINQVMTAGQKVLFEYHGNNYNFTVSQAAVEGQEKSNSLERGMVSDDTYIVFETARDSGIKIVNQREAATSNIFKQKEFNLESLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQEQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKPVEEENIKVTMEDFLNALHEVVPAFGASTDDLERCRLHGMVDCGDRHKHIYQRAMLLAEQVKVSKGSPLVTCLLEGSRGSGKTALAATVGIDSDFPYVKIVSAETMIGLHESTKCAQIIKVFEDAYRSPLSVIVLDDIERLLEYVAIGPRFSNSISQTLLVLLKRLPPKGKKLMVIGTTSELDFLDSIGFCDTFSVTYHVPNLNTNDAKKVLEQLNVFADEDIDTAAEVLNDMPIRKLYMLIEMAAQGEQGGSAEAIFSGKEKIKISHFFDCLQDVVRI 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0670 683 Pfam Cell division protein 48 (CDC48), domain 2 61 106 IPR004201 -
Lal16g0670 683 SMART AAA_5 192 339 IPR003593 -
Lal16g0670 683 SMART AAA_5 472 610 IPR003593 -
Lal16g0670 683 Gene3D - 145 337 IPR027417 -
Lal16g0670 683 PANTHER BNAA03G50350D PROTEIN 6 682 - -
Lal16g0670 683 Gene3D - 434 605 IPR027417 -
Lal16g0670 683 CDD AAA 457 592 - -
Lal16g0670 683 Gene3D - 338 425 - -
Lal16g0670 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 435 IPR027417 -
Lal16g0670 683 Gene3D - 39 136 - -
Lal16g0670 683 SUPERFAMILY Cdc48 domain 2-like 38 141 IPR029067 -
Lal16g0670 683 Pfam ATPase family associated with various cellular activities (AAA) 477 591 IPR003959 GO:0005524|GO:0016887
Lal16g0670 683 Pfam ATPase family associated with various cellular activities (AAA) 196 336 IPR003959 GO:0005524|GO:0016887
Lal16g0670 683 PANTHER VESICULAR-FUSION PROTEIN NSF 6 682 IPR039812 GO:0016887|GO:0035494
Lal16g0670 683 Pfam AAA+ lid domain 363 418 IPR041569 -
Lal16g0670 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 653 IPR027417 -
Lal16g0670 683 ProSitePatterns AAA-protein family signature. 307 325 IPR003960 GO:0005524|GO:0016887
Lal16g0670 683 CDD AAA 194 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0670 Lal-Chr16 4347186 4358281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0670 187 423 Calmodulin-binding Proteins AT3G56690 36.905 1.01e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0670 K06027 - gmx:100779259 1230.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0670 16 4347186 4358281 Lal23g0948 23 11559271 11570998 LSH