Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0668 ATGGGTGATAATGTTTTGGATCTCAACCTTCTTGGTGTTGAGGAATTGGCTTGTCATCATGAAGGCCAGAGTCTAAGGCCAAGGAACCCTGCACCCTTTTTATTAAAGACTTATAATTTGTTGGAAGAAGGTGAAGATGATAACAAGAAAATTGTGTCATGGAATGTAGATGGAAGAGGTTTTGTTGTGTGGTCTCCAGCTGAATTCTCAGATCTCACTTTGCCTAGATATTTCAAGCACAGCAACTTCTCTAGCTTCATTCGACAATTGAATACCTATGGATTTAAGAAAATATCATCTAAAAGATGGGAATTCAAGCATGAGAAATTTCAGAGGGGTTGCAAGCATTTGCTAGTTGAAATAACAAGGAAAAAGGGTGAGCCAAGTGTTTTTCCATCATACCTGAAATCTTGTTCAGAGGAAAATGGAATGAGTAATTCCATGGAAGTAAACAACAATCAACAAATACTTATGGAGGAGAACAAGAACCTAAAGGAGGAAAGATTGGAGCTGCAAATGCAGATAGCTGAATGCAAAGCAATGGAAATGAAATTGCTTGAGTATCTCTCTCAATTTGTGGACAATCACCAAAACAAAGTTAGGAAACTATGA 612 0.3758 MGDNVLDLNLLGVEELACHHEGQSLRPRNPAPFLLKTYNLLEEGEDDNKKIVSWNVDGRGFVVWSPAEFSDLTLPRYFKHSNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCKHLLVEITRKKGEPSVFPSYLKSCSEENGMSNSMEVNNNQQILMEENKNLKEERLELQMQIAECKAMEMKLLEYLSQFVDNHQNKVRKL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0668 203 SUPERFAMILY "Winged helix" DNA-binding domain 28 124 IPR036390 -
Lal16g0668 203 Coils Coil 147 184 - -
Lal16g0668 203 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A-LIKE 21 202 - -
Lal16g0668 203 ProSitePatterns HSF-type DNA-binding domain signature. 74 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal16g0668 203 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 202 IPR027725 -
Lal16g0668 203 Pfam HSF-type DNA-binding 33 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal16g0668 203 Gene3D - 26 125 IPR036388 -
Lal16g0668 203 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal16g0668 203 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal16g0668 203 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lal16g0668 203 SMART hsfneu3 29 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0668 Lal-Chr16 4339279 4345320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0668 30 193 HSF AT5G62020 37.824 8.18e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lal16g0668 HSF_DNA-bind 5.5e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0668 K09419 - gmx:100789792 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0668 16 4339279 4345320 Lal16g0668 16 4339279 4345320 ECH