Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0667 TCTCACACTTCTCTCTCTCTCTCTCTCCTTCCTGATTCTTATTTGCTTCTATTTGAAGAAAAAAGTTTGATTTTTTTCGAGATGTATGTTGCTTCCATGCGAAAGTCTTTCAAGGATTCCTTGAAAATCCTTGAAGCTGATATTCAACATGCCAATACCCTGGCGTCAGATTTTCCAAGGGAGTATGATGGTGCATGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTTTTTTTGGTGCAATGGACTGATTGTCATCTTGCTGGAGCTCTTGGACTGTTAAGAATCTTAATTTACAAGGTGTATGTGGATGGGACAACCACCATGTCTATTCAAGAAAGAAGAGCAAGTATTAGAGAATTCTATGCGGTCATTTATCCTTCTTTGATGCAACTTCAGAAAGGCGTTACAGATACAGAGGAGAAAAAGCAAAAGACTGAATGCATGGAGAGGTATCGTAGAAGGGATGATGAGGACCATAGGCAACTCTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGAGATGAATAGTAAGATTGTGTTGCCCAACTGCAATCATGGCATGTGCCTGAAATGCTATCGGGAGTGGCAAACAAGGTCACAGTCATGCCCATTTTGCCGTGACAGTCTCAAGAGAGTGAACTCGGGTGATCTCTGGGTATTTACTGATAAGAGGGATGTAGTAGATATGGCAACAGTGACAAGGGAGAATCTTAGAAGACTTTTTATATACATAGATAAATTGCCTTTGACTGTTCCAGACTCCCTTTTTGACACTTATGATTCCCACCTAAGGTAA 825 0.4085 SHTSLSLSLLPDSYLLLFEEKSLIFFEMYVASMRKSFKDSLKILEADIQHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSIQERRASIREFYAVIYPSLMQLQKGVTDTEEKKQKTECMERYRRRDDEDHRQLSDIDIEREDECGICMEMNSKIVLPNCNHGMCLKCYREWQTRSQSCPFCRDSLKRVNSGDLWVFTDKRDVVDMATVTRENLRRLFIYIDKLPLTVPDSLFDTYDSHLR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0667 274 SUPERFAMILY RING/U-box 165 221 - -
Lal16g0667 274 PANTHER PEROXISOME BIOGENESIS FACTOR 10-LIKE 30 274 - -
Lal16g0667 274 Pfam Zinc finger, C3HC4 type (RING finger) 175 221 - -
Lal16g0667 274 SMART ring_2 178 215 IPR001841 -
Lal16g0667 274 ProSitePatterns Zinc finger RING-type signature. 193 202 IPR017907 -
Lal16g0667 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 225 IPR013083 -
Lal16g0667 274 ProSiteProfiles Zinc finger RING-type profile. 178 216 IPR001841 -
Lal16g0667 274 PANTHER RING FINGER PROTEIN 41, 151 30 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0667 Lal-Chr16 4334224 4338965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0667 170 219 C3H Transcription Factor Family AT5G41350 40.741 6.88e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0667 K25840 - gmx:100786183 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0667 16 4334224 4338965 Lal15g0611 15 4243526 4246690 LSH
Lal16g0667 16 4334224 4338965 Lal23g0950 23 11578293 11583020 LSH