Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0665 ATGAGTTGTGGCTGCTTTGGAGCCTCAACTTTGAAGAAGAAAAGGAGCCCTAATGAAATAGATGGATACCCACTTGATAATGTTAGGCATTTCTCCGACAAAGAATTGAGATTGGCCACTGACAATTACAATATGAGCAATAAGATTGGGCGAGGAGGTTTTGGAACTGTTTTCCGGGGAACCTTAAAAAATCGGAGACAGGTAGCAGTGAAGACCCTTTCAGCTTGGTCAAGGCAGGGAGTTCGGGAATTTTTGACTGAAATTAATACTATTTCACATGTTAAGCATCCAAACCTTGTTGAATTGATCGGTTGCTGCGTTGAAGGACCAAGTCGTGTGTTAGTCTATGAGTATGTGGAAAATAACAGCCTTGATCGTGCATTACTTGGCACATCGATTTCTAACTTCAGACTTGACTGGAGAAAAAGAGCTGGTATCTGCATGGGCACGGCTAGGGGTCTTGCATTTCTCCAGGAAGAACTTGTGCCGCATATTGTGCACAGAGACATCAAAGCTAGCAATGTACTGCTTGACAGAGACTTCAATCCAAAAATAGGAGATTTTGGGTTGGCAAAATTATTTCCAGATGACATCACTCACATTAGCACAAGAATTGCTGGAACGACTGGTTACTTAGCGCCAGAGTATGCAATGGGTGGGCAATTAACAATGAAGGCTGATGTATATAGCTTTGGGGTTCTTATACTCGAAATAGTTAGTGGCAAAAGCAGTGCACGGGCAAACTGGGGAGGGTCACAGAAATTCCTCTTGGAATGGGCTTGGCAACTTCATGAAGGGGGGAAGCTATTGGAGCTTGTGGACCCAGACATGGTTGAATATCCGGAGGAGGAGGTAATTAGATACATGAAGGTAGCTTTCTTCTGCACACAAGCAGCAGCAAGTAGAAGACCACTTATGTCGCAGGTTGTCGATATGTTATCGAAGAAAACCCGCCTCAACGAGAAGCAACTTACAGCTCCAGGCTTCTTCCTTGATTCAGGAGAATCATCAAGAAATAAATCATCCTATGATGGGTCTGTAACCTATCAATTTAGCTCTACCCCGGTCAGTATAACTCAGATAACCCCACGGTGA 1095 0.4384 MSCGCFGASTLKKKRSPNEIDGYPLDNVRHFSDKELRLATDNYNMSNKIGRGGFGTVFRGTLKNRRQVAVKTLSAWSRQGVREFLTEINTISHVKHPNLVELIGCCVEGPSRVLVYEYVENNSLDRALLGTSISNFRLDWRKRAGICMGTARGLAFLQEELVPHIVHRDIKASNVLLDRDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAMGGQLTMKADVYSFGVLILEIVSGKSSARANWGGSQKFLLEWAWQLHEGGKLLELVDPDMVEYPEEEVIRYMKVAFFCTQAAASRRPLMSQVVDMLSKKTRLNEKQLTAPGFFLDSGESSRNKSSYDGSVTYQFSSTPVSITQITPR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0665 364 Gene3D Transferase(Phosphotransferase) domain 1 119 328 - -
Lal16g0665 364 ProSiteProfiles Protein kinase domain profile. 43 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0665 364 Pfam Protein tyrosine and serine/threonine kinase 45 313 IPR001245 GO:0004672|GO:0006468
Lal16g0665 364 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 354 - -
Lal16g0665 364 SMART serkin_6 43 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal16g0665 364 CDD STKc_IRAK 49 315 - -
Lal16g0665 364 SUPERFAMILY Protein kinase-like (PK-like) 26 328 IPR011009 -
Lal16g0665 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Lal16g0665 364 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
Lal16g0665 364 PANTHER - 1 354 - -
Lal16g0665 364 Gene3D Phosphorylase Kinase; domain 1 14 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0665 Lal-Chr16 4323195 4327687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0665 12 329 Receptor kinase-like Gene Family AT1G07650 55.247 1.91e-108 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lal16g0665 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0665 - - gmx:100775344 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0665 16 4323195 4327687 Lal23g0952 23 11599977 11604977 LSH
Lal16g0665 16 4323195 4327687 Lal5g1746 5 19511574 19515300 PCT
Lal5g1746 5 19511574 19515300 Lal16g0665 16 4323195 4327687 PCT