Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0658 ATGATGAAGCATAATAGTGGAACCATGTACCCCTCCTCACTCATTATAAATAGCCATGTATTTCTCATTGCTTTTCACCCATTTTCCAATCACAGTTTTGCTTACTGTGAGTGTGTGAGCTTCCACAATATGGATAATATTGTACTAAAGCTGACAAGTTTATTATGCACCTTAGCTTTTTTACTTTTTATATCCTTTAAGCCTTCTGTTTCTTCTAGACATAGGCAGTGGAGTGGTGGGAGAAAATTGAGCTTTGGTGATAATGGTGATCTTGTCACTAACTTGCCTAGCCAACCCCATGTAGATTTTCAGCACTATGCTGGCTATGTCATGGTAAATGAAACCAATGGTAGAGCACTTTTTTATTGGTTTTATGAAGCTATGACCAGTCCAGAAGAGAAACCATTGGTGCTATGGCTAAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGAGCAACACAAGAGATTGGTCCATTTTTAGTTGATGATGATGGCCAAGGCCTTAAATTTAATAACTTCTCATGGAACAAAGAAGCCAACATGTTATTCTTGGAATCTCCTGTTGGAGTTGGATTTTCCTACTCAAATACAACCAGTGACTATGAACAATTGGGAGATGACCTCACAGCTAATGATGCTTACTCATTTTTACACAATTGGTTCCTCAAGTTTCCATCATATAGAACAAGGACATTTTACATAGCAGGGGAGAGTTATGCAGGAAAGTATGTACCAGAGTTAGCTGAACTCATCCTTGATAGGAACAATGATCCATCCCTTCACATTGATCTAAAGGGAATTTTGCTAGGTAACCCTGAAACATCTGATGTTGAGGACTGGATAGGTCTAGTTGATTATGCTTGGAGCCATGCTGTGATATCTGATGAAACTCATAAAATAATAAGAAAAAGTTGTGACTTTAACAGCAGTGATCCATGGACTAATGAAGATTGTAGTGAAGGTGTAGGTGAAGTACTCAAACAGTATAGGGAAATTGATATCTACAGCCTCTATACCTCTGTCTGTTTTGCCAGTACCGCGAGTTCAAATGATCAACCAATGCAAAGGCGCACATTAAAAATGGTGTGTGACAAGATGCCTAGAATAATGGGTGGTTATGACCCTTGCTTAGATGGCTATGCTAAAGCTTTTTATAATAGACCAGATGTTCAAAAGGCCTTACATGCTAGTGATGGTCACAATCTAAAGAACTGGACTATTTGCAACAACAAGATATTTGATGATTGGGCGGATTCTAAGTCAACTGTTATCCCAATTTACAAGAAGCTTATTTCAGAAAAACTTAGGATTTGGGTTTACAGTGGAGACACAGATGGTAGAGTACCAGTGTTGTCAACAAGGTACAGCTTAAATACTCTAGCTTTACCTGTTACTAAGCCATGGAGTCCTTGGTACCATGAAAATGAGGTTAGTGGGTGGTATGAAGAATATGAAGGGCTTACATTTGCAACATTTAGAGGAGCTGGACATGCAGTTCCATGTTTTAAACCAAGCAACTCACTTGCATTCTTCTCCTCTTTCTTACGTGGAGAATCACCACCTTCTATAAAATAA 1578 0.3897 MMKHNSGTMYPSSLIINSHVFLIAFHPFSNHSFAYCECVSFHNMDNIVLKLTSLLCTLAFLLFISFKPSVSSRHRQWSGGRKLSFGDNGDLVTNLPSQPHVDFQHYAGYVMVNETNGRALFYWFYEAMTSPEEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDDDGQGLKFNNFSWNKEANMLFLESPVGVGFSYSNTTSDYEQLGDDLTANDAYSFLHNWFLKFPSYRTRTFYIAGESYAGKYVPELAELILDRNNDPSLHIDLKGILLGNPETSDVEDWIGLVDYAWSHAVISDETHKIIRKSCDFNSSDPWTNEDCSEGVGEVLKQYREIDIYSLYTSVCFASTASSNDQPMQRRTLKMVCDKMPRIMGGYDPCLDGYAKAFYNRPDVQKALHASDGHNLKNWTICNNKIFDDWADSKSTVIPIYKKLISEKLRIWVYSGDTDGRVPVLSTRYSLNTLALPVTKPWSPWYHENEVSGWYEEYEGLTFATFRGAGHAVPCFKPSNSLAFFSSFLRGESPPSIK 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0658 525 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 54 522 IPR001563 GO:0004185|GO:0006508
Lal16g0658 525 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 184 IPR001563 GO:0004185|GO:0006508
Lal16g0658 525 PRINTS Carboxypeptidase C serine protease (S10) family signature 185 195 IPR001563 GO:0004185|GO:0006508
Lal16g0658 525 PRINTS Carboxypeptidase C serine protease (S10) family signature 221 246 IPR001563 GO:0004185|GO:0006508
Lal16g0658 525 PRINTS Carboxypeptidase C serine protease (S10) family signature 488 501 IPR001563 GO:0004185|GO:0006508
Lal16g0658 525 Pfam Serine carboxypeptidase 99 518 IPR001563 GO:0004185|GO:0006508
Lal16g0658 525 PANTHER CARBOXYPEPTIDASE 54 522 - -
Lal16g0658 525 Gene3D alpha/beta hydrolase 87 345 IPR029058 -
Lal16g0658 525 ProSitePatterns Serine carboxypeptidases, serine active site. 235 242 IPR018202 GO:0004185
Lal16g0658 525 Gene3D - 377 415 - -
Lal16g0658 525 Gene3D - 424 518 - -
Lal16g0658 525 SUPERFAMILY alpha/beta-Hydrolases 88 519 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0658 Lal-Chr16 4252460 4256486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0658 380 519 Calmodulin-binding Proteins AT2G22960 31.915 1.19e-15 73.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0658 16 4252460 4256486 Lal23g0960 23 11656254 11661866 LSH