Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0657 ATGATGGCGGAGAATGATAACTTTGACTTTTCGGATCTGTTCCCCGTTCTTGATGACGACGGAGATGATGAGACGTGTATTGATTTTCAGATGATTATGAAGCTTCTCGATGAGGATCCTGTCCATGTGGAGGAGTGTAGTCCTATGGATTCTTCATTAAAAAGTGTTTCGCCTGGTGAATCTAGCATCAACAATATGTTCCAGCTTCAAAATGATGCTTCACATAGTTCTATCGTTGACAACGATGATGTAAGTTTTGAAGATTATATCAAAGCCAACCATGGAGGAGTTTCTGGACATCAGGGAACAGATGGCAGTCCTTTTGTTGCTGACTCGTCTCTTACTTTTTCGCCTGGTGGTATTTATTCTCAACTATGGACAAATGAAGAAATGATGAGAAACATGAAGGCTGAAAATAACAAGTTCTATGGTGATGTGTCTTGTGTGAGGAATAGCATGTACTCAAGCACTACTGGGGGGGCATCTTTACAGGATAGTCAATTTATGTTAACAGATAGTGGGTTTCCATCAATTTTTTCTGATAATGTTATCTTCGAAGACAAGGCATCTGAGCCGCTTTCAACTTGTGCTTCAGACATGTCATATGGAGACCAATCTCTTCTCGTAAAGGGTGAAAGAGATGAACTGATTACACCTTACCAAAATAATGATGATGCCAAGTTCAATGTAGGTCAAGACATGAAGCAGTTACGTGGTGCTTTTCCTTCTATGGAGTATCAGAGTTATGAATGTTTTAAGCCTGAGGGTAATTTCACAGTTACAACTTCTATAGCCAGTAAAAAACAAGATATGGACATATCTCTGCCATATGCACAAGCATCAATTGCCAGTGAGAAACAGTTTGGTTGTGTTAAGAGAGAAGGAGGGGGCAAAATGATACAACAGAAACATATTGATTCTCATCTTTCAAAAGGTAATGCTGAAAATATCCATGTTGAAGATGACAATGGTGTTTGCATTATTGAAGACATTAGTCACCCTCCACCTACTAGGAAATCTGTAGACATTGGGAGTTCCCTCAGTATATCCCGTTCTTCTAGATATGTGGATTCCCGATCATGCACAGTTAGAAGCACAAGGCTGAAGGCATGTGATGAGCGAAATATATTACGAGTTGCACTGCAGGATCTATCTCAGCCAAAGTCCGAAGTTAGCCCACCAGATGGATTGCTGGCAGTTCCTCTTTTCAGACACCAGAGAATTGCTTTATCATGGATGATTCAGAAGGAATCATCAAGCATATATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACTCTGTCCACTATTTCCTTAATATTAACGGAAAAACCACCAACACTTAGTGTGTGCCCCAATGCTCCAAAAGGTGAATTAGAAACGTTGAATCTGGATGCGGATGATGACATGCTTCCACTGAATGGAGTGAATAAAGAATGTAAATATCCAGTCAAGAGTGTGAATTTGTTGATGCAGGCAAAAGGAAGGCCATCTGCTGGAACCCTTATTGTTTGCCCCACCAGTGTCCTGCGCCAATGGGCTGAGGAGTTGCGCAATAAGGTAACCAGCCAAGCAAATCTCTCTGTGCTTGTGTACCATGGAAGCAATCGAACAAAAGATCCTTACGAGATGGCCAAATATGATGTTGTTTTGACAACTTACTCAATTGTCGGCATGGAAGTCCCAAAGCAGCCTCTAGTTGACAAAGATGAAGAAAAGGGAGATTTTGAAGATCACACTGTTCTGAGTAGGAAACGGAAAGAGCCTTCTAATTCTAATAGAAATGGCAATAAGGGGAGGAGAAACACAGTGCTTGAGGCTGTTGCACGCCCTCTTGCAAGGGTGGCATGGTTTAGGGTTGTCCTGGATGAGGCACAGAGTATAAAGAATTACAGAACTGAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCTAAGCGTAGATGGTGCTTGTCAGGGACTCCCATCCAGAATGCAGTTGATGATCTATACAGTTATTTTAGATTTCTTAGATATGACCCTTATGCAGTCCATTCATCATTTTGTTTTATGATTAAGAACCCAATTAACAGGAATCCAAAAAAAGGATATAGAAAGCTACAAGCCGTCCTGAAGACAATAATGTTACGTCGGACCAAAGGCACACTTCTTGATGGGGAACCTATTATTTCCTTGCCTCCTAAGCATGTAAAGCTGAAAAAGGTTGATTTTTCACAAGAGGAACGTAACTTCTATTCCAGACTAGAGGCCGATTCACGTGCACAGTTTCAGGAATATGCTAATGCCGGAACTGTCAAACAAAATTATGTCAATATTTTGCTTATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTCTGCTTGTCAAGCATTACAATACTGACTCTCTGTGGAGAACTTCGGCTGAGTTGGCAAAGAAGATTCCTCAGGAAAAACAAATATCACTTCTGAAATGTTTAGAGGCTTCCTTGGCCCTCTGTGGCATCTGTAATGATCCTCCTGAAGATGTTGCTGTTTCTGTCTGTGGCCACGTTTTCTGCAACCAGTGCATTTGTGAACATCTTAATGGTGATGACAATCAGTGCCCCACTACAAATTGCAAAACCAGACTAAACACATCTAAGGTGTTTTCAAAAGATACATTGAAAAGTTGTCTGTCTGAGCAGGGTTGTGATAATTTGCCTGGTTTCTCTGGTTCTGAAGTAGAGGAATCTGAGCCTTGGTTTCAGAGCCAGCCATATGATTCTGCGAAGATTAAGGCTGCACTTGAGGTATTGCAGTCATTGTGTAAGCCACAATGCTATACATCAAAAAGTGTTTCTGCACATAGCACTGTTGGGGAAAATAGTGACTGCTCTGGCAGCTCTTCTGATTCTAACAAAGGAAAATCCTTCAAGAACTTTCCTGAGAATCACAAATTGTCTGGTAATAGAAGCTCCAATGATTCAGTTACTGTTGTAGGGGAGAAGGCAATAGTGTTTTCTCAGTGGTCGAGGATGTTAGATTTGCTTGAAGAGCATCTTAAGAAATCTTCAATTCAGTATAGAAGGCTTGACGGAACAATGTCGGTTGTTGCAAGAGATAAGGCTGTTAAAGACTTTAACACTCTCCCTGAGGTATCAGTTATGATTATGTCATTGAAGGCTGCCAGTCTTGGTCTAAATATGGTTGCAGCATGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGATCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGACTGTTTTGCGGTTAACTGTGAAAGATACAGTTGAAGATCGTATTTTAGCTCTACAGCAAAGGAAGCGAAAGATGGTTGCTTCCGCATTTGGGGAGAATGGAACTGGTGGTACTCAGAGTCGCCTTACAGTGGATGATTTAAAATACTTATTCATGATGTGA 3441 0.4138 MMAENDNFDFSDLFPVLDDDGDDETCIDFQMIMKLLDEDPVHVEECSPMDSSLKSVSPGESSINNMFQLQNDASHSSIVDNDDVSFEDYIKANHGGVSGHQGTDGSPFVADSSLTFSPGGIYSQLWTNEEMMRNMKAENNKFYGDVSCVRNSMYSSTTGGASLQDSQFMLTDSGFPSIFSDNVIFEDKASEPLSTCASDMSYGDQSLLVKGERDELITPYQNNDDAKFNVGQDMKQLRGAFPSMEYQSYECFKPEGNFTVTTSIASKKQDMDISLPYAQASIASEKQFGCVKREGGGKMIQQKHIDSHLSKGNAENIHVEDDNGVCIIEDISHPPPTRKSVDIGSSLSISRSSRYVDSRSCTVRSTRLKACDERNILRVALQDLSQPKSEVSPPDGLLAVPLFRHQRIALSWMIQKESSSIYCSGGILADDQGLGKTLSTISLILTEKPPTLSVCPNAPKGELETLNLDADDDMLPLNGVNKECKYPVKSVNLLMQAKGRPSAGTLIVCPTSVLRQWAEELRNKVTSQANLSVLVYHGSNRTKDPYEMAKYDVVLTTYSIVGMEVPKQPLVDKDEEKGDFEDHTVLSRKRKEPSNSNRNGNKGRRNTVLEAVARPLARVAWFRVVLDEAQSIKNYRTEVARACWGLRAKRRWCLSGTPIQNAVDDLYSYFRFLRYDPYAVHSSFCFMIKNPINRNPKKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKHVKLKKVDFSQEERNFYSRLEADSRAQFQEYANAGTVKQNYVNILLMLLRLRQACDHPLLVKHYNTDSLWRTSAELAKKIPQEKQISLLKCLEASLALCGICNDPPEDVAVSVCGHVFCNQCICEHLNGDDNQCPTTNCKTRLNTSKVFSKDTLKSCLSEQGCDNLPGFSGSEVEESEPWFQSQPYDSAKIKAALEVLQSLCKPQCYTSKSVSAHSTVGENSDCSGSSSDSNKGKSFKNFPENHKLSGNRSSNDSVTVVGEKAIVFSQWSRMLDLLEEHLKKSSIQYRRLDGTMSVVARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQRKRKMVASAFGENGTGGTQSRLTVDDLKYLFMM 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0657 1146 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 417 676 IPR014001 -
Lal16g0657 1146 CDD SF2_C_SNF 991 1098 - -
Lal16g0657 1146 Gene3D - 376 464 IPR038718 -
Lal16g0657 1146 Gene3D - 488 577 IPR038718 -
Lal16g0657 1146 Gene3D - 601 715 IPR038718 -
Lal16g0657 1146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 714 IPR027417 -
Lal16g0657 1146 Pfam Zinc finger, C3HC4 type (RING finger) 830 867 IPR018957 GO:0046872
Lal16g0657 1146 SUPERFAMILY RING/U-box 827 874 - -
Lal16g0657 1146 MobiDBLite consensus disorder prediction 947 985 - -
Lal16g0657 1146 MobiDBLite consensus disorder prediction 571 598 - -
Lal16g0657 1146 CDD DEXDc_SHPRH-like 402 714 - -
Lal16g0657 1146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 722 1145 IPR027417 -
Lal16g0657 1146 MobiDBLite consensus disorder prediction 571 605 - -
Lal16g0657 1146 Pfam SNF2-related domain 423 791 IPR000330 GO:0005524|GO:0140658
Lal16g0657 1146 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 327 1145 - -
Lal16g0657 1146 ProSiteProfiles Zinc finger RING-type profile. 830 869 IPR001841 -
Lal16g0657 1146 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 982 1141 IPR001650 -
Lal16g0657 1146 Gene3D - 729 1145 IPR027417 -
Lal16g0657 1146 SMART helicmild6 1005 1088 IPR001650 -
Lal16g0657 1146 Pfam Helicase conserved C-terminal domain 989 1088 IPR001650 -
Lal16g0657 1146 SMART ring_2 830 868 IPR001841 -
Lal16g0657 1146 ProSitePatterns Zinc finger RING-type signature. 845 854 IPR017907 -
Lal16g0657 1146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 823 881 IPR013083 -
Lal16g0657 1146 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 327 1145 - -
Lal16g0657 1146 SMART ultradead3 398 695 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0657 Lal-Chr16 4236017 4245924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0657 293 1145 RAD5 or RAD16-like Gene Family AT1G61140 57.740 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal16g0657 SNF2_N 4.3e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0657 - - lang:109332935 1761.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0657 16 4236017 4245924 Lal15g0596 15 4141070 4153312 LSH
Lal16g0657 16 4236017 4245924 Lal3g0077 3 458338 467277 PCT
Lal3g0077 3 458338 467277 Lal16g0657 16 4236017 4245924 PCT