Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0654 ATGGCTGGTCGATATGACAACCCTTTTGAGGAAGAAGAAGTTAACCCTTTCTCTAATCTTGGAAGTGTTGCCCCTGCCAAAAATTCGAGGCCTTCACCTCTTAGGCCAGAACGTGCTGATTATAATTATGGCTTTGGTGAAACTGTTGATATACCTCTCGATACATCATCGGATTTGAAAAAGAAGGAGAAAGAACTCCAATCCAAGGAGGCTGAATTGAAAAAACGAGAACAGGATGTGAGACGGAAAGAAGAAGCTGCTGCAAGAGCTGGAATTGTTATTGAGGAGAAGAACTGGCCACCATTTTTTCCAATTATTCATCATGATATTGCTAATGAAATTCCAGCTCCTCTTCAAAGACTGCAATATGTTGCATTTACTACACTTTTAGGATTAACAGTGTGCCTTTTCTGGAATATTATAGCTGTCACTGCCGCTTGGATTAAGGGTGAAGGTGTAAAAATATGGTTTCTTGCTATTATCTATTTCATAGCAGGAGTTCCTGGAGGGTATTTTCTGTGGTATCGTCCCTTATATCGTGCATTTAGGAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCATGTTTTACCTGCTTCACATAGGATTCTGCATCTTAGCTGCAATTGCTCCTCCTATAGTTTTCAAGGGAAAATCCCTGACAGGCATTCTGTCTGCCATAGATGTTGTGGGCGACCATGCTTTGATTGGAATCTTCTACTTCATTGGTTTTGGATTATTCTGCCTTGAAATATTGATCAGCCTTTGGGTTATTCAGCAAGTATATATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAACGGGAAGCTGCACGAGGAGCACTGAGAGCTGCAGTATGA 864 0.4109 MAGRYDNPFEEEEVNPFSNLGSVAPAKNSRPSPLRPERADYNYGFGETVDIPLDTSSDLKKKEKELQSKEAELKKREQDVRRKEEAAARAGIVIEEKNWPPFFPIIHHDIANEIPAPLQRLQYVAFTTLLGLTVCLFWNIIAVTAAWIKGEGVKIWFLAIIYFIAGVPGGYFLWYRPLYRAFRNESALKFGWFFMFYLLHIGFCILAAIAPPIVFKGKSLTGILSAIDVVGDHALIGIFYFIGFGLFCLEILISLWVIQQVYMYFRGSGKAAEMKREAARGALRAAV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0654 287 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 1 286 IPR007273 GO:0015031|GO:0016021
Lal16g0654 287 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 1 286 - -
Lal16g0654 287 Coils Coil 56 86 - -
Lal16g0654 287 Pfam SCAMP family 96 267 IPR007273 GO:0015031|GO:0016021
Lal16g0654 287 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0654 Lal-Chr16 4208472 4214315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0654 1 287 Miscellaneous Gene Families AT1G11180 70.990 1.04e-148 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0654 K19995 - gmx:100795535 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0654 16 4208472 4214315 Lal23g0965 23 11694483 11699438 LSH
Lal16g0654 16 4208472 4214315 Lal11g0154 11 1009997 1019943 PCT
Lal11g0154 11 1009997 1019943 Lal16g0654 16 4208472 4214315 PCT