Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0642 ATGGGAAAAAAATCAGCGGCGACGGAAGAGGAAGAGGCATTTCCGGACCACCTGCGATGCGGGCGAACAGACGGCCGTCAATGGCGGTGCCGGCGGCGAGTGATGGACAATTTGAAGCTATGCGAGATTCACTACCTTCAAGGTCGTCATCGCCAGTTCAAGGAGAAAGTTCCAGAATCACTGAAACTTCAAAGGAAGCGCAAGAAGAACAAGAAAGACCCTGTTATCAATTTCAGCAGCAATGCAGAAATTAGGGCACGGAGAATGAAGAAAAAGCGCAAGGTTTCAGAGGGTTCAGAGGCATTGGGTTCTAAGAAGAAAGGGTTTAAGTTGAAGAATGGTAATAGCAATATGCAGTTGGATCTTATAAGGATGGTTTTGAAGAGAGAAGTTGAGAAAAGGAAGAAGACAAAGAAGATGAAGAAAGAAGAAGATGATGATTATGATGATGAAGAAACAGAATCAGATTACAATGAAGAAGAGTTGAAGAGAGAATTGCCTAATGGTGTAATGGCAATATCTCCAGCTTCAATACCTCATCATTATAACAATGTGGGTCCCGGATCACAAACCCATTGTGATGTGAAAGTTGGTGTTGATTATAGAGCAGTTACACCACGTTACTTCAGGTCCAAGAATGTTGATAGGATCTCTGGTGCCAAGTTGCAGGTTGTGCCATATGGACCAAACTTCAAGGGTAAGGGTCGGAGGAAGAAGTGTCATTGGTGCCAGAGAAGTGATTCTTGGAAACTTATAAAGTGTTTGAGATGTCAGAATAAGTTTTTCTGCATGGATTGCATTAAAGACGGGTCTTTTGGCACTCCATATGAAGTTAAGAAGGCATGTCCAGTGTGTCGAGGGACTTGCGCCTGTAAGGATTGCTTGTCAAATCAATGTAAAGACAGTGAAAGTAAGGAATATTTGGCTGGTAAAAGCAGAGTTGATAGAATATTACATTTTCACTATTTGATCTGTATGCTCCTTCCATTACTAAAGCAAATAAGTGATGAACAGAAAGCTTTGCTAGAAACAGAAGCAAAGATCAATGGGAATGAACTTTCTGATACTCAGACAAAGCAGGTTGACTTTGGCTACACTGACAAAGTTTGTTGCAATCATTGCAAAAGACCTGTTTCGGATATCCATAGAAGCTGTCTTAGTTGTTCGTATAGCCTTTGCTTAAGTTGCTGTCAGAAATTAAGTCCAGGAAGAATTTCTGAAGGAACTAACTCATGCATGTTTAAGCTACCTGATAACGTGAAAGCTTGCACTTCCATGGATGAGAAGCCCATTTCCAGTGGCAATTTAACTGATACTTCAGTATTGCCTGAGTGGACAAGTTGTAATGGAATTGATAATGTATCATGCCCGCCTACAGAGCTTGGTGGTTGTGGTAACAGCCACCTTGATTTGAGATGTACTTTTCCCTTAAGTTGGATCAAAGAGATGGAAGTAAAAGCCGAAGAAATTGTGTGCAGCTATGACTTTCCTGAAATTTCAGATAAAAGTTCAAGCTGCTCACTCTGTTTTGACACAGATCACAGAAGTAACAGATTTAAGTTGTTGCAAGAAGCAGCTTTCAGAGAAGATTCAAATGATAATTGCTTGTTTTATCCCACAGTTTTGGACATCAATGGTAATAATTTTGAACATTTTCAGAAACACTGGGGAAAAGGCCACCCTATGGTAGTGCGAGATGTGCTCCAAAGTTCACCGAACCTTAATTGGGATCCACTGATCATGTTCTGTACTTATCTTGAGAGGAGCATTGCAAGATATGAGAATAATAAGGACCTGCTTGAATCTTGTTTGGATTGGTGTGAGGTGGAGATTAACATTAAGCAGTATTTTGCTGGATCTTTCAGACGCCATCCACAGAAAAACACTTGCCATGACATGCTGAAACTGAAGTGGTGGCTTTCTTCCCAGCTATTCAAAGAGCAGTTCCCAACTCATTTTGCTGAAGTAATTAATGCTCTACCAGTTCAAGAATACATGAATCCCATGTCTGGTCTTTTAAATTTAGTTGCAAAGTTGCCACAAGGGAGTTCAAAACATGAGATTGGGCCATATGTCTATATTTCATATGGCTGTGCTGACAAAGAAGCTAATTATGTGACAAAACTCTGCTATGACTCGTATGATGTGGTTAATATTATGGCACATACCACAGATGTCCCCCTTACTACTGAACTCCTTACAAAATTAAGGAATCTACTGAAAAAGCAGAAAGCCCTGTGTCAAAGGGAGACTTCTAAAATGTCTACTGAGCAGCTACAGGAGCAGAAAGTGAATGGAATCCCATTATTGGATGCTCAAGACATGAAGCAAAAAGGATGGCAGAGTATGGCCACAGAAGGAAAGGACTTTTTCAGGAGAGTCAATAGAACATCTTGCATCTCAACTGAAACAAAAAAATTAGGGAGTAGGAGTATAGACAACAATGCTAACCTGGATGGAGAATGTGATGTATTTTCTGATTCTGATTCTGAGCGCTCTTTACTTCTCCATGGGTGTGTTCAAAGCACTGAACTGTTTACAAAAAATAATTCTATAAATCCTTCCCAAAGCTCAAACAGTGAGAAAAGTAAGTTAAATGAGCATTCCGGTGCCCAGTGGGATGTCTTTCGCAGAGAAGATGTGCCAAAGCTCATAGAATACCTTAAAAAATACTGTGATAAACCTTCTTATACCGGTGACTATCATCACAAGAAGATGGTTCATCCTATTCTAGATCAGAGCCTTTTTCTTGACAACACTCACAAAAAAAGGCTTAAGGAGGAGTTTAATATTGAACCTTGGACTTTTCAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATAAGGAATTCTAAGTGTTGTGTACATGTTGTATTAGAATTTGTGTCGCCGGAAAATGTTAGCGAGTGTATCAAGTTGGTAGATGAGGTTCATCTGCTGCCTGATGACCATAAAGCAAAAGTAGACAAGTTGGAGGTGAAGAAACTGGCCCTACATAGCATGAGTGCAGCAATTAAAGAAGTACATGAGCTTACATGCAAAACATGA 3066 0.4035 MGKKSAATEEEEAFPDHLRCGRTDGRQWRCRRRVMDNLKLCEIHYLQGRHRQFKEKVPESLKLQRKRKKNKKDPVINFSSNAEIRARRMKKKRKVSEGSEALGSKKKGFKLKNGNSNMQLDLIRMVLKREVEKRKKTKKMKKEEDDDYDDEETESDYNEEELKRELPNGVMAISPASIPHHYNNVGPGSQTHCDVKVGVDYRAVTPRYFRSKNVDRISGAKLQVVPYGPNFKGKGRRKKCHWCQRSDSWKLIKCLRCQNKFFCMDCIKDGSFGTPYEVKKACPVCRGTCACKDCLSNQCKDSESKEYLAGKSRVDRILHFHYLICMLLPLLKQISDEQKALLETEAKINGNELSDTQTKQVDFGYTDKVCCNHCKRPVSDIHRSCLSCSYSLCLSCCQKLSPGRISEGTNSCMFKLPDNVKACTSMDEKPISSGNLTDTSVLPEWTSCNGIDNVSCPPTELGGCGNSHLDLRCTFPLSWIKEMEVKAEEIVCSYDFPEISDKSSSCSLCFDTDHRSNRFKLLQEAAFREDSNDNCLFYPTVLDINGNNFEHFQKHWGKGHPMVVRDVLQSSPNLNWDPLIMFCTYLERSIARYENNKDLLESCLDWCEVEINIKQYFAGSFRRHPQKNTCHDMLKLKWWLSSQLFKEQFPTHFAEVINALPVQEYMNPMSGLLNLVAKLPQGSSKHEIGPYVYISYGCADKEANYVTKLCYDSYDVVNIMAHTTDVPLTTELLTKLRNLLKKQKALCQRETSKMSTEQLQEQKVNGIPLLDAQDMKQKGWQSMATEGKDFFRRVNRTSCISTETKKLGSRSIDNNANLDGECDVFSDSDSERSLLLHGCVQSTELFTKNNSINPSQSSNSEKSKLNEHSGAQWDVFRREDVPKLIEYLKKYCDKPSYTGDYHHKKMVHPILDQSLFLDNTHKKRLKEEFNIEPWTFQQHVGEAVIIPAGCPYQIRNSKCCVHVVLEFVSPENVSECIKLVDEVHLLPDDHKAKVDKLEVKKLALHSMSAAIKEVHELTCKT 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0642 1021 MobiDBLite consensus disorder prediction 85 114 - -
Lal16g0642 1021 MobiDBLite consensus disorder prediction 93 107 - -
Lal16g0642 1021 PANTHER PROTEIN B160 9 1020 - -
Lal16g0642 1021 SMART cupin_9 649 984 IPR003347 -
Lal16g0642 1021 ProSiteProfiles JmjC domain profile. 668 984 IPR003347 -
Lal16g0642 1021 Pfam WRC 15 56 IPR014977 -
Lal16g0642 1021 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 1020 IPR045109 GO:0032454|GO:0033169
Lal16g0642 1021 SUPERFAMILY Clavaminate synthase-like 545 1007 - -
Lal16g0642 1021 Pfam JmjC domain, hydroxylase 868 965 IPR003347 -
Lal16g0642 1021 MobiDBLite consensus disorder prediction 132 161 - -
Lal16g0642 1021 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Lal16g0642 1021 ProSiteProfiles Zinc finger RING-type profile. 240 286 IPR001841 -
Lal16g0642 1021 Gene3D Cupin 809 993 - -
Lal16g0642 1021 Gene3D Cupin 540 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0642 Lal-Chr16 4097593 4114184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0642 15 102 GRF Transcription Factor Family AT4G37740 32.258 1.87e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal16g0642 JmjC 1.9e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0642 K15601 - gmx:100810673 1345.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0642 16 4097593 4114184 Lal5g1768 5 19691039 19698391 PCT
Lal16g0642 16 4097593 4114184 Lal11g0138 11 904992 911093 PCT
Lal5g1768 5 19691039 19698391 Lal16g0642 16 4097593 4114184 PCT
Lal11g0138 11 904992 911093 Lal16g0642 16 4097593 4114184 PCT