Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0630 ATGGATCATCCAACATCATACCATTGTTGTATCCACCAACGACAACAACTCCGAAACCTAAAACCCACAGACTACTTCAGAATTGAAGCCAATGTTATTATTCAATATTACTTTCCAATAGATGATCTCAACTCTCATCCACTTATCATAGATACAATATCCTTGATCCAAACCTCTATGACCCTACCCTGCAAACATGTCTTTGAAATTAATCGTAAAGATTTCCTTCTAAGATACTTAGTCAACTCATCATATGCAACCCTCTTGGCCTATTGTTCTCCAAGTTACATTGAGGACCTATCATGCGAAATCATAGCTCAACTTCGTAGAGTTTACATTAGTCATGCTTCAAATGAAGGATTCACAAAATCATCAAATTCAAGAGGTGAATCATTTGATTGTGATATGTATATTACCATTGAGATACCAATTAACACTAGTGATGAAGAGTTGGCCATAGAAGAACAGTTATCCATGCAAGAAGATGTGAAGATGATTCCAGCATCTGACAAAGAAGTTCAATCTTTGAAAACATACAAGCTTCCACGACAATGTCAAATATGTTTGGAAAAGTTCTATGGGGAGAAAGAAGATGAAGATACCGATGTAGAGATCACAACAATGCCATGTGGTCATGTGTTTCACCATCAATGTATCAAACAATGGCTGCAAACTAGTCACATGTGTCCTTTATGTCGTTGCCCTTTATCTAGTGACAACAAAGGAAAAACATAA 735 0.3646 MDHPTSYHCCIHQRQQLRNLKPTDYFRIEANVIIQYYFPIDDLNSHPLIIDTISLIQTSMTLPCKHVFEINRKDFLLRYLVNSSYATLLAYCSPSYIEDLSCEIIAQLRRVYISHASNEGFTKSSNSRGESFDCDMYITIEIPINTSDEELAIEEQLSMQEDVKMIPASDKEVQSLKTYKLPRQCQICLEKFYGEKEDEDTDVEITTMPCGHVFHHQCIKQWLQTSHMCPLCRCPLSSDNKGKT 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0630 244 ProSiteProfiles Zinc finger RING-type profile. 185 233 IPR001841 -
Lal16g0630 244 PANTHER F6A14.12 PROTEIN-RELATED 116 236 - -
Lal16g0630 244 Pfam Ring finger domain 184 233 IPR001841 -
Lal16g0630 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 238 IPR013083 -
Lal16g0630 244 SMART ring_2 185 232 IPR001841 -
Lal16g0630 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 116 236 - -
Lal16g0630 244 SUPERFAMILY RING/U-box 184 238 - -
Lal16g0630 244 SMART ringv_2 184 233 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0630 Lal-Chr16 4031295 4032029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0630 150 236 C3H Transcription Factor Family AT1G18760 34.409 5.06e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0630 - K22378 lang:109350403 389.423