Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0612 ATGGAGGACCAACTCCACCACCACACCAAAACTATAAATCCAAATTCTACCACGCGCTTAAAGCTCTTCGGCTTCAACGTCCACGAAGACACCATCATTGATGACGAAGTAGCACCGGTTGAAGAAACTTCAGACTCAAACCCCAAACCCACTTCTCCTTCCGGAGACTCAGGTGGCGGCGGAGAAGGCGACGCTGCTGGCTTCGCAACCTCCTCTGGTGATCGGAAATACGAGTGCCAGTACTGTTGCCGAGAGTTCGCAAACTCACAAGCACTTGGTGGACACCAAAACGCGCACAAGAAAGAGCGTCAACAGCTCAAGCGCGCTCAGTTACAAGCCACGCGAAACGCAGCCGTTTCGTTCGTTCGAAACCCAATCATCTCCGCCTTCTCTCCACCGCCGCACCTCCTCGCTCCGGCGGGTTCTATGATGATCCCGGCAGGGACATCATCATGGGTCTATATGCAACCACGTGCAGCAGCACCTCCTTGTCACGTGTCAGTTTCACACGGTTGTGTTTTCCCGAACAGTAACAACAACAACGGTATCAGCAGTAATAACTGTAACGGTGGAAGTAACTATAGCTTTATAAGTGGTACAAGATCTGTGGGTGCAGGGTTGTTACCGTACGGTGGGAGAGTAGAGGATTCGTCTTCCGCATTTTCAACGATGGGCTCACAAGTACAGGGCCGGGCCCACTTAAGTAGAATTGATGGGCCATCTTCTGTGAATAGGTTTTCTAAAGGGGAAGTGGGTCCCAGTTTCGATGAGGGGTTCGGATTGAATTTGCACCTTAGCTTAGCACCCCCATGA 813 0.5154 MEDQLHHHTKTINPNSTTRLKLFGFNVHEDTIIDDEVAPVEETSDSNPKPTSPSGDSGGGGEGDAAGFATSSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAVSFVRNPIISAFSPPPHLLAPAGSMMIPAGTSSWVYMQPRAAAPPCHVSVSHGCVFPNSNNNNGISSNNCNGGSNYSFISGTRSVGAGLLPYGGRVEDSSSAFSTMGSQVQGRAHLSRIDGPSSVNRFSKGEVGPSFDEGFGLNLHLSLAPP 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0612 270 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Lal16g0612 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
Lal16g0612 270 MobiDBLite consensus disorder prediction 36 69 - -
Lal16g0612 270 SUPERFAMILY beta-beta-alpha zinc fingers 73 104 IPR036236 -
Lal16g0612 270 Gene3D Classic Zinc Finger 66 124 - -
Lal16g0612 270 PANTHER ZINC FINGER PROTEIN GIS3 11 269 - -
Lal16g0612 270 PANTHER ZINC FINGER PROTEIN 5 11 269 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0612 Lal-Chr16 3940944 3941756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0612 15 269 C2H2 Transcription Factor Family AT1G68360 45.318 2.55e-52 169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0612 16 3940944 3941756 Lal15g0540 15 3746251 3747003 LSH