Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0583 ATGGATCCACTCCCTATGATCAACGACACCTCATTTTCTAACGCTGGTCCCACCAATACGCTGCCGTTTCACTTATCCGAGATCTGGCACTTTCCCGCCACAGGGGTTTCGGGTATAAGTACGTCGCCGTTTGGACACGGGTTGGGTCAGTTCGCTGATTTAGGATCGACCCGTCATGTTTCGGGTAACGACCCGATTCATTTGGAGCGTAGAGCGATAATTCTAAATAGGAAGAGGCGCGACTCTGAGGAGGAATCTGCTAAGGTCACTTCCATGAGTGATGGTGGTGATGGAAAACGGATGAAGACAAAAGGGAACAAGAGAAATGAGAGTGGAAAAGGTGAAACAGAAACCAGTTCAGGAAAGCCTGCGGAGCAAGAAAAGACTAATCTTGAGCTTCCTCTTAAACAAGATTACATTCATGTTAGAGCTAGAAGGGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTAGTCCCCGGTTGTAATAAGGTTATTGGGAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCACTTCAGCGCCAAGTAGAGTTCTTGTCAATGAAGCTTGAAGCAGTAAATTCAAGAATGACCCCTGGCATTGAAGTATTTCCTCCTAAAGATTTTCATCAGCAAACATTTGACACAGCCGGAATGCCATTCTCTTCACAAGCTACAAGAGAATATAGTCGGGGCTCATCACCAGAGTGGTTACATATGCAGGTAGGTGGTTTTGAAAGAACAAAGTAG 807 0.4411 MDPLPMINDTSFSNAGPTNTLPFHLSEIWHFPATGVSGISTSPFGHGLGQFADLGSTRHVSGNDPIHLERRAIILNRKRRDSEEESAKVTSMSDGGDGKRMKTKGNKRNESGKGETETSSGKPAEQEKTNLELPLKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMTPGIEVFPPKDFHQQTFDTAGMPFSSQATREYSRGSSPEWLHMQVGGFERTK 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0583 268 Gene3D - 145 218 IPR036638 GO:0046983
Lal16g0583 268 SMART finulus 154 204 IPR011598 GO:0046983
Lal16g0583 268 MobiDBLite consensus disorder prediction 79 115 - -
Lal16g0583 268 Pfam Helix-loop-helix DNA-binding domain 152 199 IPR011598 GO:0046983
Lal16g0583 268 MobiDBLite consensus disorder prediction 79 136 - -
Lal16g0583 268 CDD bHLH_AtBPE_like 138 223 - -
Lal16g0583 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 217 IPR036638 GO:0046983
Lal16g0583 268 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 267 IPR024097 GO:0006355
Lal16g0583 268 PANTHER BNAC05G07950D PROTEIN 1 267 - -
Lal16g0583 268 Coils Coil 195 215 - -
Lal16g0583 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 198 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0583 Lal-Chr16 3783490 3786498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g0583 1 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 58.898 1.69e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal16g0583 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0583 - - lang:109332242 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0583 16 3783490 3786498 Lal16g0583 16 3783490 3786498 ECH
Lal16g0583 16 3783490 3786498 Lal15g0523 15 3624365 3629221 LSH
Lal16g0583 16 3783490 3786498 Lal23g1025 23 12063198 12066183 LSH