Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g0578 ATGTCTCGCACGTGCTCACAGTGTGGCAACAACGGCCACAACTCACGCACATGCACCGACGCCACGGCGTCCGGCGGCGGAGAATCTCCTAGAGAGAACAGCATCATGCTCTTCGGCGTTCGAGTTACTGAAGGGAACTCCAATTCCAATCCATTCAGGAAGAGTGCTAGCATGGTCAACCTCTCTCAATACGAACACCAAAACCCTAATGAACCTAACGCCGCCGACGCCGGTTACGTTTCAGACGACGTCGTTCACGCCTCTGGCCGTAGCCGCGAGCGCAAAAGAGGTGTTCCATGGACGGAGGAAGAGCATAAGCTATTCCTATTGGGGTTGCATAAGGTAGGTAAAGGAGATTGGAGAGGGATTTCTAGAAACTTCGTCAAAACTCGAACACCAACCCAGGTGGCTAGTCATGCTCAGAAGTACTTTCTCCGCCGCCACAACAACACCCGTCGCCGCCGTAGATCTAGCCTCTTTGATATCACCACCGACACGGTGATGGAACCCTCAACCATAATGGAAGAAGAACAAGTTGTTCAGCAAGAAATGGTGGTGCAACTTCCACCTATCTCCGCCGCATATCCGCCACCAAATTACGGTGGATTCCCTGGCTCGGCTTTCCCTATGGCGCTGGCTCCGGTGGTGTTGCCTGTAGTTGGCGGTGGTATATTAGCCAAGCCTATTAGGCCAACACCGATTTTGCCAGTGCCACCATCTTCGAAGATGGCTAGTTTGAACTTAAAAGAGAATACTTCTCCACCTCTTCCTCTCACCGAGCCTTTGCCTTTGTCACTGAAGCTGCCTCTGCCGGCATCCAAGGATCAATCATCGGAGAATAGCAGCCACTCATCATCGTCATCTGCATCGGCTTTTCAATCTATGTCTGCAGAGAAGTTCAACAATGGTGGGGATAGCATTATTAGTGTTGCTTGA 936 0.515 MSRTCSQCGNNGHNSRTCTDATASGGGESPRENSIMLFGVRVTEGNSNSNPFRKSASMVNLSQYEHQNPNEPNAADAGYVSDDVVHASGRSRERKRGVPWTEEEHKLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNNTRRRRRSSLFDITTDTVMEPSTIMEEEQVVQQEMVVQLPPISAAYPPPNYGGFPGSAFPMALAPVVLPVVGGGILAKPIRPTPILPVPPSSKMASLNLKENTSPPLPLTEPLPLSLKLPLPASKDQSSENSSHSSSSSASAFQSMSAEKFNNGGDSIISVA 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g0578 311 MobiDBLite consensus disorder prediction 245 293 - -
Lal16g0578 311 MobiDBLite consensus disorder prediction 271 293 - -
Lal16g0578 311 CDD SANT 99 144 IPR001005 -
Lal16g0578 311 PANTHER TRANSCRIPTION FACTOR KUA1 1 308 - -
Lal16g0578 311 SMART sant 96 146 IPR001005 -
Lal16g0578 311 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Lal16g0578 311 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Lal16g0578 311 SUPERFAMILY Homeodomain-like 94 147 IPR009057 -
Lal16g0578 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Lal16g0578 311 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 1 308 - -
Lal16g0578 311 MobiDBLite consensus disorder prediction 1 32 - -
Lal16g0578 311 ProSiteProfiles SANT domain profile. 95 148 IPR017884 -
Lal16g0578 311 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Lal16g0578 311 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 95 146 IPR006447 GO:0003677
Lal16g0578 311 Gene3D - 98 149 - -
Lal16g0578 311 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g0578 Lal-Chr16 3759707 3762850 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal16g0578 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g0578 - - gmx:780554 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0578 16 3759707 3762850 Lal16g0578 16 3759707 3762850 ECH
Lal16g0578 16 3759707 3762850 Lal23g1029 23 12098721 12100962 LSH